View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20647_low_12 (Length: 250)

Name: NF20647_low_12
Description: NF20647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20647_low_12
NF20647_low_12
[»] chr8 (8 HSPs)
chr8 (1-240)||(24508475-24508714)
chr8 (1-222)||(27712419-27712640)
chr8 (139-221)||(15329284-15329366)
chr8 (139-221)||(15509653-15509735)
chr8 (174-227)||(30648222-30648275)
chr8 (188-221)||(14726657-14726690)
chr8 (188-221)||(26088521-26088554)
chr8 (174-239)||(29552125-29552190)
[»] chr7 (2 HSPs)
chr7 (1-221)||(17293826-17294046)
chr7 (171-221)||(6612167-6612217)
[»] chr3 (1 HSPs)
chr3 (100-227)||(4819159-4819286)
[»] chr1 (1 HSPs)
chr1 (102-217)||(26087315-26087430)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 24508714 - 24508475
Alignment:
Q  1 tgatttagaattttatattctaattttcttgcacctctcttggtatttttcttgagaaagcaaactaggagttcaagaacctgatacttgttattttgca 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||    
T  24508714 tgatttagaattttatattctaatttccttgcacctctcttggtatttttcttgagaaagcaaactaggagtttaagaacctcatactggttattttgca 24508615  T
Q  101 cagcaatatgcaatgcagtcttacccctcacagttacgtcttcaatggattctggacaagcaaagaggagtttagctaaaatttcatcctcaccattttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24508614 cagcaatatgcaatgcagtcttacccctcacagttacgtcttcaatggattctggacaagcaaagaggagtttagctaaaatttcatcctcaccattttg 24508515  T
Q  201 acttgcaaaatgaagaggagtcatgccctccttccctttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24508514 acttgcaaaatgaagaggagtcatgccctccttccctttg 24508475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27712640 - 27712419
Alignment:
Q  1 tgatttagaattttatattctaattttcttgcacctctcttggtatttttcttgagaaagcaaactaggagttcaagaacctgatacttgttattttgca 100  Q
    ||||||||  || |||||||||| ||||||||| |||||||  ||||| |||| ||||| ||||| || || |||||  |||   | |||||||||| ||    
T  27712640 tgatttagtgttctatattctaactttcttgcatctctcttcctatttctcttaagaaaacaaacaagaagatcaagggccttgaatttgttatttttca 27712541  T
Q  101 cagcaatatgcaatgcagtcttacccctcacagttacgtcttcaatggattctggacaagcaaagaggagtttagctaaaatttcatcctcaccattttg 200  Q
     ||| |||||||  ||||||| |||||||||||| ||||||||||| || || ||||||||||  ||||  ||||||||||  ||| | ||  |||| ||    
T  27712540 aagctatatgcagagcagtctcacccctcacagtcacgtcttcaatagaatcaggacaagcaacaaggaacttagctaaaaggtcaacttcttcattatg 27712441  T
Q  201 acttgcaaaatgaagaggagtc 222  Q
    ||||||||||||| ||||||||    
T  27712440 acttgcaaaatgaggaggagtc 27712419  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 15329366 - 15329284
Alignment:
Q  139 tcttcaatggattctggacaagcaaagaggagtttagctaaaatttcatcctcaccattttgacttgcaaaatgaagaggagt 221  Q
    |||||||||||||||||||| |  ||||| |  | ||||||||  ||| |||||||| |||| ||||||||||||||||||||    
T  15329366 tcttcaatggattctggacacgagaagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagt 15329284  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 15509735 - 15509653
Alignment:
Q  139 tcttcaatggattctggacaagcaaagaggagtttagctaaaatttcatcctcaccattttgacttgcaaaatgaagaggagt 221  Q
    |||||||||||||||||||| |  ||||| |  | ||||||||  ||| |||||||| |||| ||||||||||||||||||||    
T  15509735 tcttcaatggattctggacacgagaagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagt 15509653  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 30648275 - 30648222
Alignment:
Q  174 agctaaaatttcatcctcaccattttgacttgcaaaatgaagaggagtcatgcc 227  Q
    |||||| |||| | ||||||||||||||| |||||||||||||||||| |||||    
T  30648275 agctaacatttgaacctcaccattttgacatgcaaaatgaagaggagttatgcc 30648222  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 14726690 - 14726657
Alignment:
Q  188 cctcaccattttgacttgcaaaatgaagaggagt 221  Q
    ||||||||||||||||||| ||||||||||||||    
T  14726690 cctcaccattttgacttgcgaaatgaagaggagt 14726657  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 26088554 - 26088521
Alignment:
Q  188 cctcaccattttgacttgcaaaatgaagaggagt 221  Q
    |||||||| |||||||||||||||||||||||||    
T  26088554 cctcaccaatttgacttgcaaaatgaagaggagt 26088521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 29552190 - 29552125
Alignment:
Q  174 agctaaaatttcatcctcaccattttgacttgcaaaatgaagaggagtcatgccctccttcccttt 239  Q
    ||||||||  ||| |||| ||| |||| |||||| ||||||||||||||| ||| |||||||||||    
T  29552190 agctaaaaggtcaacctctccaatttggcttgcataatgaagaggagtcaagccttccttcccttt 29552125  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17293826 - 17294046
Alignment:
Q  1 tgatttagaattttatattctaattttcttgcacctctcttggtatttttcttgagaaagcaaactaggagttcaagaacctgatacttgttattttgca 100  Q
    |||||||| || |||||||| || | ||| |||||||| | | |||||||| | ||||||||||| ||||| | |||| ||| | | || ||||||| ||    
T  17293826 tgatttagtatgttatattcaaactctctagcacctctttcgatatttttcctaagaaagcaaacaaggagatgaagagcctcaaagtttttatttttca 17293925  T
Q  101 cagcaatatgcaatgcagtcttacccctcacagttacgtcttcaatggattctggacaagcaaagaggagtttagctaaaatttcatcctcaccattttg 200  Q
    | |||||||||| |||||| | ||||| |||||| || |||| |||||| |  ||||||||||| || | ||||||||||| |||| |||||||| ||||    
T  17293926 ccgcaatatgcagtgcagtttcaccccccacagtcacatcttgaatggaattcggacaagcaaaaagtaatttagctaaaagttcaacctcaccaatttg 17294025  T
Q  201 acttgcaaaatgaagaggagt 221  Q
    |||||||||||||||||||||    
T  17294026 acttgcaaaatgaagaggagt 17294046  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 6612167 - 6612217
Alignment:
Q  171 tttagctaaaatttcatcctcaccattttgacttgcaaaatgaagaggagt 221  Q
    |||||||||||  ||| |||||||| |||||||||||||||||||||||||    
T  6612167 tttagctaaaagatcaacctcaccaatttgacttgcaaaatgaagaggagt 6612217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 227
Target Start/End: Complemental strand, 4819286 - 4819159
Alignment:
Q  100 acagcaatatgcaatgcagtcttacccctcacagttacgtcttcaatggattctggacaagcaaagaggagtttagctaaaatttcatcctcaccatttt 199  Q
    |||||||||||||||||||||| |  ||||||||| | || |||||| ||||| |||||||||||||| |  |||||||||| |||| |||| ||| |||    
T  4819286 acagcaatatgcaatgcagtctcaaacctcacagtcaagtattcaatagattccggacaagcaaagagaaaattagctaaaagttcaacctcgccaattt 4819187  T
Q  200 gacttgcaaaatgaagaggagtcatgcc 227  Q
    |||||||||||||||||||||| |||||    
T  4819186 gacttgcaaaatgaagaggagttatgcc 4819159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 26087315 - 26087430
Alignment:
Q  102 agcaatatgcaatgcagtcttacccctcacagttacgtcttcaatggattctggacaagcaaagaggagtttagctaaaatttcatcctcaccattttga 201  Q
    ||||||||||||||| |||| || ||||||||| || |||  |||||| |  |||||  ||| ||||| |||||||||||  ||| |||| ||| |||||    
T  26087315 agcaatatgcaatgcggtctcacacctcacagtcacatctctaatggaattaggacatacaaggaggaatttagctaaaaggtcaacctctccaatttga 26087414  T
Q  202 cttgcaaaatgaagag 217  Q
    ||||||||||||||||    
T  26087415 cttgcaaaatgaagag 26087430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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