View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20647_low_13 (Length: 205)
Name: NF20647_low_13
Description: NF20647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20647_low_13 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 42393137 - 42393341
Alignment:
| Q |
1 |
cgtggtgtaggtatggcaagcaaaggtgtcttctttttgagaatgataccatatttctctgatacatccaacttttctccttgaggtattgtccaatcaa |
100 |
Q |
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| T |
42393137 |
cgtggtgtaggtatggcaagcaaaggtgtcttctttttgagaatgataccatatttctctaatacatccaacttttctccttgaggtattgtccaatcaa |
42393236 |
T |
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| Q |
101 |
acgagtgcataagggtggctataaagtacaaaacattcctctcagccattgctattccagcacatatccttcttccagaaccaaaggggaaataattgaa |
200 |
Q |
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| T |
42393237 |
acgagtgcataagggtggctataaagtacaaaacattcctctcagccattgctattccagcacatatccttcttccagaaccaaaggggaaataattgaa |
42393336 |
T |
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| Q |
201 |
gtcat |
205 |
Q |
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||||| |
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| T |
42393337 |
gtcat |
42393341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 42386981 - 42387185
Alignment:
| Q |
1 |
cgtggtgtaggtatggcaagcaaaggtgtcttctttttgagaatgataccatatttctctgatacatccaacttttctccttgaggtattgtccaatcaa |
100 |
Q |
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|||| ||| ||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||||| |||||||||||||| | ||||||||||| |
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| T |
42386981 |
cgtgttgtgggtatggcaagcaaaggcgtcttcttttttagaacgataccaaatttctctgatacatccatattttctccttgaggaactgtccaatcaa |
42387080 |
T |
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| Q |
101 |
acgagtgcataagggtggctataaagtacaaaacattcctctcagccattgctattccagcacatatccttcttccagaaccaaaggggaaataattgaa |
200 |
Q |
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| T |
42387081 |
acaagtgcacaagggtggctacaaagtacaaaaccgtcctctcagacattgctattccggcacaaatccttcttccagagccaaaagggaaatagttgaa |
42387180 |
T |
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| Q |
201 |
gtcat |
205 |
Q |
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||||| |
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| T |
42387181 |
gtcat |
42387185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 42376585 - 42376789
Alignment:
| Q |
1 |
cgtggtgtaggtatggcaagcaaaggtgtcttctttttgagaatgataccatatttctctgatacatccaacttttctccttgaggtattgtccaatcaa |
100 |
Q |
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|||||||| ||||||||||||| ||||||||||||||| |||| |||||| ||||||| || || |||| |||||||||||||| | ||||||||||| |
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| T |
42376585 |
cgtggtgtgggtatggcaagcagaggtgtcttcttttttagaacaataccaaatttctccgacacctccagattttctccttgaggaactgtccaatcaa |
42376684 |
T |
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| Q |
101 |
acgagtgcataagggtggctataaagtacaaaacattcctctcagccattgctattccagcacatatccttcttccagaaccaaaggggaaataattgaa |
200 |
Q |
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|| |||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |
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| T |
42376685 |
acaagtgcacaagggtggctacaaagtacaaaaccgtcctctcagccattgctattccggcacaaatccttcttccagagccaaaagggaaatagttgaa |
42376784 |
T |
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| Q |
201 |
gtcat |
205 |
Q |
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||||| |
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| T |
42376785 |
gtcat |
42376789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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