View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20647_low_2 (Length: 502)

Name: NF20647_low_2
Description: NF20647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20647_low_2
NF20647_low_2
[»] chr1 (10 HSPs)
chr1 (1-490)||(31507291-31507786)
chr1 (8-125)||(28190483-28190600)
chr1 (9-122)||(39939195-39939308)
chr1 (39-125)||(28190591-28190677)
chr1 (63-128)||(39939317-39939382)
chr1 (39-122)||(37543843-37543926)
chr1 (11-105)||(3360386-3360480)
chr1 (63-123)||(7438883-7438943)
chr1 (63-122)||(31507231-31507290)
chr1 (55-128)||(51232500-51232573)
[»] chr8 (2 HSPs)
chr8 (9-125)||(951337-951453)
chr8 (56-123)||(31661518-31661585)
[»] chr6 (4 HSPs)
chr6 (11-123)||(32549404-32549516)
chr6 (9-123)||(214736-214850)
chr6 (9-105)||(11004257-11004353)
chr6 (9-94)||(4332963-4333048)
[»] chr7 (5 HSPs)
chr7 (9-123)||(35582257-35582372)
chr7 (9-94)||(33487212-33487297)
chr7 (65-123)||(30458108-30458166)
chr7 (64-126)||(35582185-35582247)
chr7 (66-123)||(5998462-5998519)
[»] chr5 (1 HSPs)
chr5 (1-122)||(38739118-38739239)
[»] chr4 (4 HSPs)
chr4 (11-124)||(9675009-9675122)
chr4 (1-122)||(55520939-55521060)
chr4 (9-121)||(53711686-53711797)
chr4 (9-126)||(47533775-47533892)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-124)||(48633-48756)
[»] scaffold0067 (1 HSPs)
scaffold0067 (10-100)||(15327-15414)
[»] chr2 (2 HSPs)
chr2 (9-80)||(35494924-35494995)
chr2 (9-82)||(29927766-29927838)


Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 31507291 - 31507786
Alignment:
Q  1 ccaacgatagttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgt 100  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  31507291 ccaacgacagttaactgccgttgaattttaaccgatgatagttaactaccgatagaatttaaggttaaacttatcatttcatggtgtttcttagttttgt 31507390  T
Q  101 gtgaaattggaaaaacaattttcaaattggtattgaacacatttacaataagtccatttgtacctaaaccttgaggggccaaggcctcactgctaaaaat 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31507391 gtgaaatgggaaaaacaattttcaaattggtattgaacacatttacaataagtccatttgtacctaaaccttgaggggccaaggcctcactgctaaaaat 31507490  T
Q  201 atttgctagtggcacataatgtagctagtagcataaccaagttgtttgtattagcaatgacatcttaagatatcattatagaactctaattggtattatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31507491 atttgctagtggcacataatgtagctagtagcataaccaagttgtttgtattagcaatgacatcttaagatatcattataggactctaattggtattatt 31507590  T
Q  301 t-ttaactttttcacaaaattgttaacatact-----aaaatgagctggcatgatcatcaaagttaaattattgatttcaaaactagaagactacaacta 394  Q
    | ||||||||||||| ||||||||||||||||     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31507591 tattaactttttcactaaattgttaacatacttactaaaattgagctggcatgatcatcaaagttaaattattgatttcaaaactagaagactacaacta 31507690  T
Q  395 atccttgtagaaaagggagtaaaaatttggatttatatgggctgatttgaatgctatctaggtggctgctttgccggccactatcactttattcat 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31507691 atccttgtagaaaagggagtaaaaatttggatttatatgggctgatttgaatgctatctaggtggctgctttgccggccactatcactttattcat 31507786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 28190600 - 28190483
Alignment:
Q  8 tagttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaaat 107  Q
    ||||||||| |||||  ||||||||| | | ||||||||||| ||| |||||| ||||||||||| ||||||||| ||||||||| | |||||||||| |    
T  28190600 tagttaactaccgctagattttaaccagcggtagttaactactgatgaaatttgaggttaaacttgtcatttcatggtgtttctttgctttgtgtgaagt 28190501  T
Q  108 tggaaaaacaattttcaa 125  Q
     |||||| ||||||||||    
T  28190500 gggaaaagcaattttcaa 28190483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 39939308 - 39939195
Alignment:
Q  9 agttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaaatt 108  Q
    |||||||||| |||||||||||||||  | |||||||||||||||  |||||| |||||||||| |||||||| ||||||| |||  ||||| |||| |     
T  39939308 agttaactgctgctgaattttaaccgacggtagttaactaccgatgtaatttagggttaaacttgtcatttcacagtgtttattaactttgtatgaagtg 39939209  T
Q  109 ggaaaaacaatttt 122  Q
    | |||| |||||||    
T  39939208 gaaaaagcaatttt 39939195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 28190591 - 28190677
Alignment:
Q  39 tagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaaattggaaaaacaattttcaa 125  Q
    ||||||||||||||| |||||| ||||||||||| |||||| ||  |||||||||||| ||| |||| | |||||| ||||||||||    
T  28190591 tagttaactaccgatgaaatttgaggttaaacttgtcatttaatgttgtttcttagttctgtttgaagtgggaaaagcaattttcaa 28190677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 39939317 - 39939382
Alignment:
Q  63 ggttaaacttatcatttcatagtgtttcttagttttgtgtgaaattggaaaaacaattttcaaatt 128  Q
    |||||||||||||||||||| ||||||||||| ||||| |||| | ||||||| ||||||||||||    
T  39939317 ggttaaacttatcatttcatggtgtttcttagctttgtttgaagtgggaaaaataattttcaaatt 39939382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 37543843 - 37543926
Alignment:
Q  39 tagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaaattggaaaaacaatttt 122  Q
    |||||||||||| |||||||||| ||||||| || |||||| |||||||| |||||| ||| ||||| |  |||||||||||||    
T  37543843 tagttaactaccaataaaatttagggttaaatttttcattttatagtgttccttagtattgagtgaagtgtgaaaaacaatttt 37543926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 3360480 - 3360386
Alignment:
Q  11 ttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaa 105  Q
    ||||||||||||  |||||||||| |  ||||||||||| | | ||||||  |||||||||| ||||||||| ||||||||||  ||||||||||    
T  3360480 ttaactgccgctatattttaaccgatagtagttaactactgttgaaattttgggttaaacttgtcatttcatggtgtttcttaactttgtgtgaa 3360386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 7438883 - 7438943
Alignment:
Q  63 ggttaaacttatcatttcatagtgtttcttagttttgtgtgaaattggaaaaacaattttc 123  Q
    |||||||||| |||||||||||| ||| |||| ||||| |||| | |||||||||||||||    
T  7438883 ggttaaacttgtcatttcatagtattttttagctttgtatgaagtgggaaaaacaattttc 7438943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 31507290 - 31507231
Alignment:
Q  63 ggttaaacttatcatttcatagtgtttcttagttttgtgtgaaattggaaaaacaatttt 122  Q
    |||||||||||| |||||||||||||| |||| ||||| |||| | ||||||| ||||||    
T  31507290 ggttaaacttattatttcatagtgttttttagatttgtttgaagtgggaaaaaaaatttt 31507231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 51232573 - 51232500
Alignment:
Q  55 aaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaaattggaaaaacaattttcaaatt 128  Q
    ||||||| ||||||| ||  |||||||  ||||||||||  |||||||||||| | ||||| ||||||||||||    
T  51232573 aaatttagggttaaatttgacatttcacggtgtttcttaactttgtgtgaaatggaaaaaataattttcaaatt 51232500  T

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Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 951337 - 951453
Alignment:
Q  9 agttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaaatt 108  Q
    ||||||||||||||||||||||||||    |||||||||| |||||||||||||| ||||| || | ||||||||||||||||||| || ||||||| |     
T  951337 agttaactgccgctgaattttaaccgacagtagttaactatcgataaaatttaagattaaatttgttatttcatagtgtttcttagcttcgtgtgaagtg 951436  T
Q  109 ggaaaaacaattttcaa 125  Q
    | |||||||||||||||    
T  951437 gaaaaaacaattttcaa 951453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 31661585 - 31661518
Alignment:
Q  56 aatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaaattggaaaaacaattttc 123  Q
    ||||| |||||||| || ||||||||||||||||||||   ||| |||||||  ||||||||||||||    
T  31661585 aatttgaggttaaaattgtcatttcatagtgtttcttatcattgagtgaaatgcgaaaaacaattttc 31661518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 32549516 - 32549404
Alignment:
Q  11 ttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaaattgg 110  Q
    |||||||||| |||||||||||||  ||||||||||||||||| ||||||  |||||||||| |||||| || |||||||||||  |||||||||||  |    
T  32549516 ttaactgccgatgaattttaaccgacgatagttaactaccgatgaaatttggggttaaacttgtcatttaatggtgtttcttagcattgtgtgaaatgtg 32549417  T
Q  111 aaaaacaattttc 123  Q
    |||||||||||||    
T  32549416 aaaaacaattttc 32549404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 214850 - 214736
Alignment:
Q  9 agttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaaatt 108  Q
    ||||||| |||| ||||||||||||| || ||| |||||||||||  ||||| | |||||| || |||||||||| ||||||||||  |||| |||| |     
T  214850 agttaaccgccgttgaattttaaccgatggtagctaactaccgatgtaatttgaagttaaatttgtcatttcataatgtttcttagcattgtatgaagtg 214751  T
Q  109 ggaaaaacaattttc 123  Q
    |||||||||||||||    
T  214750 ggaaaaacaattttc 214736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 11004257 - 11004353
Alignment:
Q  9 agttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaa 105  Q
    |||||||||||| || |||| |||||| | | ||||||||| |||  |||||  |||||||||| |||||| ||| |||||||||| ||||||||||    
T  11004257 agttaactgccgttggatttaaaccggcggttgttaactacggatggaatttggggttaaacttgtcattttataatgtttcttagctttgtgtgaa 11004353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 4333048 - 4332963
Alignment:
Q  9 agttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttag 94  Q
    ||||||||| || ||||||||||||| | ||| |||||||||||| ||| || | |||||| || | |||| || |||||||||||    
T  4333048 agttaactgtcgatgaattttaaccgataataattaactaccgatgaaaattgacgttaaatttgttatttaatggtgtttcttag 4332963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 35582257 - 35582372
Alignment:
Q  9 agttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaa-cttatcatttcatagtgtttcttagttttgtgtgaaat 107  Q
    |||||| || ||||||||||||| ||| | |||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||| || ||||||| |    
T  35582257 agttaattgtcgctgaattttaatcggcggtagttaactaccaatagaatttgaggttaaaacttatcatttcatagtgtttcttagcttcgtgtgaagt 35582356  T
Q  108 tggaaaaacaattttc 123  Q
     |||||| ||||||||    
T  35582357 gggaaaagcaattttc 35582372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 33487297 - 33487212
Alignment:
Q  9 agttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttag 94  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||| ||||| | |||||| || | |||| || |||||||||||    
T  33487297 agttaactgccgatgaattttaaccgctgatagttaactaccgatagaatttgaagttaaatttgttattttatggtgtttcttag 33487212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 30458166 - 30458108
Alignment:
Q  65 ttaaacttatcatttcatagtgtttcttagttttgtgtgaaattggaaaaacaattttc 123  Q
    |||||||| ||||||||||||||||| ||| ||||| |||| | |||||||||||||||    
T  30458166 ttaaacttgtcatttcatagtgtttcgtagctttgtttgaagtgggaaaaacaattttc 30458108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 35582247 - 35582185
Alignment:
Q  64 gttaaacttatcatttcatagtgtttcttagttttgtgtgaaattggaaaaacaattttcaaa 126  Q
    ||||||||||| ||||||  ||||||||||| ||||| |||| | ||||||||||||||||||    
T  35582247 gttaaacttattatttcacggtgtttcttagctttgtttgaagtgggaaaaacaattttcaaa 35582185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 5998462 - 5998519
Alignment:
Q  66 taaacttatcatttcatagtgtttcttagttttgtgtgaaattggaaaaacaattttc 123  Q
    ||||||| |||||| ||  |||||||||| ||||| |||||| |||||||||||||||    
T  5998462 taaacttgtcattttatgatgtttcttagctttgtttgaaatgggaaaaacaattttc 5998519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 38739118 - 38739239
Alignment:
Q  1 ccaacgatagttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgt 100  Q
    ||||||| |||||||||| | |||||||||| ||  | |||||||||||| |||||||||| ||||||||||||||||| || || |||||||| |||||    
T  38739118 ccaacgacagttaactgctggtgaattttaatcgacggtagttaactacctataaaatttatggttaaacttatcattttatggtatttcttagctttgt 38739217  T
Q  101 gtgaaattggaaaaacaatttt 122  Q
    ||||  |  |||||||||||||    
T  38739218 gtgaggtgagaaaaacaatttt 38739239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 9675009 - 9675122
Alignment:
Q  11 ttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaaattgg 110  Q
    ||||||||||||| |||||||| |  || || |||||| |||||||||||| |||||||||| | ||||||||||||||||||  |||||||||| |  |    
T  9675009 ttaactgccgctggattttaactgacgacagataactatcgataaaatttagggttaaacttgtgatttcatagtgtttcttaactttgtgtgaagtgag 9675108  T
Q  111 aaaaacaattttca 124  Q
    |||| |||||||||    
T  9675109 aaaagcaattttca 9675122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 55521060 - 55520939
Alignment:
Q  1 ccaacgatagttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgt 100  Q
    ||||||| |||||||||||| |||||||||||  | | || |||||||  |||  |||||  || ||||||| ||||||||| ||||||||||| |||||    
T  55521060 ccaacgaaagttaactgccgatgaattttaacttgcggtatttaactattgatgtaatttggggctaaacttgtcatttcatggtgtttcttagctttgt 55520961  T
Q  101 gtgaaattggaaaaacaatttt 122  Q
    ||||| | ||||||||||||||    
T  55520960 gtgaagtgggaaaaacaatttt 55520939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 53711797 - 53711686
Alignment:
Q  9 agttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaaatt 108  Q
    |||||||||  | |||||||||||| | |||| ||||||| | || ||||||||||||||| || ||||||||| |||||||||||| ||| ||||| |     
T  53711797 agttaactgttgatgaattttaaccagcgataattaactaacaatgaaatttaaggttaaatttgtcatttcat-gtgtttcttagtgttgagtgaagtg 53711699  T
Q  109 ggaaaaacaattt 121  Q
     ||||||||||||    
T  53711698 tgaaaaacaattt 53711686  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 47533775 - 47533892
Alignment:
Q  9 agttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgtgtgaaatt 108  Q
    |||| ||||||| |||||||| || || | |||||||| |||||| |||||| |||||||| ||||||||| || |||||||||||  ||| ||||| |     
T  47533775 agttgactgccgatgaattttgactggcggtagttaacgaccgatgaaatttgaggttaaatttatcatttaattgtgtttcttagcattgcgtgaagtg 47533874  T
Q  109 ggaaaaacaattttcaaa 126  Q
     ||||  |||||||||||    
T  47533875 tgaaaggcaattttcaaa 47533892  T

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Target: scaffold0027 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 48633 - 48756
Alignment:
Q  1 ccaacgatagttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgt 100  Q
    |||||||||||||| ||||| ||||||||||||    |||| |||| |||| |  ||||| |||||||||||||||||||||||| ||||||||   |||    
T  48633 ccaacgatagttaaatgccgttgaattttaaccaaccatagctaaccaccgcttgaatttgaggttaaacttatcatttcatagtatttcttagcaatgt 48732  T
Q  101 gtgaaattggaaaaacaattttca 124  Q
    ||||| |||||||| |||| ||||    
T  48733 gtgaagttggaaaagcaatcttca 48756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 15327 - 15414
Alignment:
Q  10 gttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcatagtgtttcttagttttgt 100  Q
    |||||||||||  ||||||||||||||| |||||||||   ||| ||| ||  ||||||| || ||||||||| ||||||||||| |||||    
T  15327 gttaactgccgacgaattttaaccggtggtagttaact---gatgaaaattggggttaaatttgtcatttcatggtgtttcttagctttgt 15414  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 35494995 - 35494924
Alignment:
Q  9 agttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttc 80  Q
    |||||||||||| ||||||||||||| || || ||||||| |||| |||||| || ||||| || |||||||    
T  35494995 agttaactgccgatgaattttaaccgatggtaattaactatcgatgaaatttgagattaaatttgtcatttc 35494924  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 29927766 - 29927838
Alignment:
Q  9 agttaactgccgctgaattttaaccggtgatagttaactaccgataaaatttaaggttaaacttatcatttcat 82  Q
    |||||||||| | || ||||||||||  ||||||||||| ||||| ||||||  ||||||| ||||||||||||    
T  29927766 agttaactgctgatggattttaaccgacgatagttaact-ccgatgaaatttggggttaaatttatcatttcat 29927838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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