View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20647_low_4 (Length: 393)
Name: NF20647_low_4
Description: NF20647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20647_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 35 - 371
Target Start/End: Original strand, 37969033 - 37969369
Alignment:
| Q |
35 |
acgacaacaatcaaattgtctcaccacattcaccattgccaccaccaccaggccgcgcccaccatgacaatatgtacatcgttcaatttccaaaggatca |
134 |
Q |
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| T |
37969033 |
acgacaacaatcaaattgtctcaccacattcaccattgccaccaccaccaggccgcgcccaccatgacaatatgtacatcgttcaatttccaaaggatca |
37969132 |
T |
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| Q |
135 |
agtctaccgcgttccaccaagtgaaaatgcattcatcgttgaaagttatcgtaatactaccaaggataagnnnnnnnnnnnncaacgtggttgttgttgc |
234 |
Q |
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| T |
37969133 |
agtctaccgcgttccaccaagtgaaaatgcattcatcgttgaaagttatcgcaatactaccaatgataagaaaaagaaaaaacaacgtggttgttgttgc |
37969232 |
T |
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| Q |
235 |
cctcgattcttgctcaccattgttttaatccttgttacaatcgttgccgttgttggaataacattagccacattgttctttgttttcaacccagagggac |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37969233 |
cctcgattcttgctcaccattgttttaatccttgttacaatcgttgctgttgttggaataacattagccacattgttctttgttttcaacccagagggac |
37969332 |
T |
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| Q |
335 |
ccacatttactattacccgctttgaggtaaaaaacgt |
371 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
37969333 |
ccacatttactattacccgctttgaggtaaaaaacgt |
37969369 |
T |
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