View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20647_low_6 (Length: 307)

Name: NF20647_low_6
Description: NF20647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20647_low_6
NF20647_low_6
[»] chr8 (5 HSPs)
chr8 (89-307)||(39284528-39284745)
chr8 (1-90)||(39284941-39285030)
chr8 (128-265)||(32897613-32897750)
chr8 (110-172)||(23586470-23586532)
chr8 (108-148)||(22573818-22573858)
[»] chr5 (6 HSPs)
chr5 (102-265)||(39466604-39466767)
chr5 (109-265)||(26449072-26449227)
chr5 (111-210)||(16290319-16290418)
chr5 (99-162)||(34732786-34732849)
chr5 (109-227)||(32528944-32529062)
chr5 (179-227)||(42458795-42458843)
[»] chr2 (9 HSPs)
chr2 (110-267)||(40626997-40627154)
chr2 (110-266)||(12027329-12027484)
chr2 (221-271)||(29463218-29463268)
chr2 (111-172)||(31514500-31514561)
chr2 (105-153)||(13526983-13527031)
chr2 (114-172)||(1529355-1529413)
chr2 (195-265)||(6279123-6279193)
chr2 (112-148)||(1345405-1345441)
chr2 (102-170)||(7671205-7671273)
[»] chr3 (3 HSPs)
chr3 (110-265)||(45817928-45818082)
chr3 (120-266)||(40417621-40417766)
chr3 (195-264)||(20525556-20525625)
[»] chr4 (6 HSPs)
chr4 (123-265)||(50876874-50877016)
chr4 (102-258)||(22205324-22205480)
chr4 (108-245)||(37910390-37910527)
chr4 (190-265)||(14518562-14518637)
chr4 (109-172)||(33235200-33235263)
chr4 (108-168)||(26634551-26634611)
[»] chr7 (3 HSPs)
chr7 (105-250)||(29127428-29127572)
chr7 (102-265)||(39595401-39595563)
chr7 (156-227)||(2333303-2333374)
[»] chr1 (10 HSPs)
chr1 (103-213)||(4075632-4075742)
chr1 (200-265)||(47142964-47143029)
chr1 (111-227)||(32712046-32712162)
chr1 (158-260)||(42471293-42471394)
chr1 (103-255)||(30952120-30952271)
chr1 (200-264)||(44108879-44108943)
chr1 (110-172)||(49288374-49288436)
chr1 (113-186)||(9381885-9381958)
chr1 (112-168)||(5786386-5786442)
chr1 (103-227)||(50004176-50004299)
[»] scaffold1822 (1 HSPs)
scaffold1822 (110-226)||(501-616)
[»] chr6 (2 HSPs)
chr6 (120-171)||(4086959-4087010)
chr6 (111-172)||(6149156-6149217)
[»] scaffold0060 (1 HSPs)
scaffold0060 (108-181)||(3304-3377)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 39284745 - 39284528
Alignment:
Q  89 aaaaaccttgaacttaagagtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatg 188  Q
    ||||||||||||||||||||||||||| ||||||| |||  ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||     
T  39284745 aaaaaccttgaacttaagagtccgtttagtgcgcaggatg-gatagagacataataggattagaaattggataaagataggataagaaagtaacatgata 39284647  T
Q  189 gacatctatcatatcatgtgtttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgtttgatacactatagacatgataagaa 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39284646 gacatctatcatatcatgtgtttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgtttgatacactattgacatgataagaa 39284547  T
Q  289 gagaaacttaattgcaaca 307  Q
    ||||||| |||||||||||    
T  39284546 gagaaacctaattgcaaca 39284528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 39284941 - 39285030
Alignment:
Q  1 tcttcccctctattataatttagggttcggtattgtctccatattgtcacattcttgttggactcaaccctatcttacaaaccgtcctaa 90  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39284941 tcttcccttctattataatttaagattcggtattgtctccatattgtcacattcttgttggactcaaccctatcttacaaaccatcctaa 39285030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 32897750 - 32897613
Alignment:
Q  128 atgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatcatgtgtttggggcaaacatgataa 227  Q
    |||||||||| |  ||||||||||||  ||||| |||||| |||| || ||| ||||||| ||||| |||| ||||||  |||||| ||| | |||||||    
T  32897750 atgatagagataagatatgattagaaaatggatcaagatatgataggatagtgacatgatagacatttatcctatcatacgtttggtgcagatatgataa 32897651  T
Q  228 aaatgaggatatcattattttatcatatcatatgtttg 265  Q
     || ||||||| |||| ||||||| |||||||||||||    
T  32897650 gaaagaggataacatttttttatcctatcatatgtttg 32897613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 23586532 - 23586470
Alignment:
Q  110 ccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggata 172  Q
    ||||||| |||||| |||| ||||||||||| ||| ||||| ||||||||||| |||||||||    
T  23586532 ccgtttgatgcgcaagataggatagagacatgataggattataagttggataatgataggata 23586470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 22573858 - 22573818
Alignment:
Q  108 gtccgtttggtgcgcatgatatgatagagacataatatgat 148  Q
    |||||||||||||||||||||  |||||||||| |||||||    
T  22573858 gtccgtttggtgcgcatgatagtatagagacatgatatgat 22573818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 265
Target Start/End: Complemental strand, 39466767 - 39466604
Alignment:
Q  102 ttaagagtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcata 201  Q
    ||||||||||||||||||||||||||||||||||| |  |||||||| |||||| ||| ||||||| |||| || ||||||| |||  |||| |||||||    
T  39466767 ttaagagtccgtttggtgcgcatgatatgatagagtcggaatatgataagaagtaggacaaagatatgatatgatagtaacaggatatacatttatcata 39466668  T
Q  202 tcatgtgtttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgtttg 265  Q
    |||  ||||||||||| | |||||| ||| || |||| |||| |||||||| |||| |||||||    
T  39466667 tcacatgtttggggcacatatgatataaaagatgatagcattgttttatcaaatcacatgtttg 39466604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 265
Target Start/End: Complemental strand, 26449227 - 26449072
Alignment:
Q  109 tccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatcatgtg 208  Q
    ||||||| ||||||| ||||||| ||||| |  ||| ||||||||  |||||||| ||| |||| || ||| ||||||| ||||  |||| |||||||      
T  26449227 tccgtttagtgcgcaagatatgacagagataggata-gattagaaaatggataaaaatatgatatgatagtgacatgatagacacttatcctatcatgct 26449129  T
Q  209 tttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgtttg 265  Q
    ||||| ||| | ||||||| || || ||||||||||||||||| |||||| ||||||    
T  26449128 tttggtgcacatatgataagaaagatgatatcattattttatcctatcatgtgtttg 26449072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 16290319 - 16290418
Alignment:
Q  111 cgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatcatgtgtt 210  Q
    |||||||||||||||||||||| ||||||| ||||||| |   | |||||||| |||| ||| || ||| ||||||| ||||  |||| |||||||||||    
T  16290319 cgtttggtgcgcatgatatgatggagacatgatatgataatgtgatggataaaaatagaatatgatagtgacatgatagacaattatcctatcatgtgtt 16290418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 34732849 - 34732786
Alignment:
Q  99 aacttaagagtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataa 162  Q
    ||||||||||||||||||||| ||||||||||||| ||| |  ||||||| |||| ||||||||    
T  34732849 aacttaagagtccgtttggtgtgcatgatatgatatagataggatatgataagaaattggataa 34732786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 32528944 - 32529062
Alignment:
Q  109 tccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatcatgtg 208  Q
    |||||||||||| |||||||||||| ||||   ||||||| | ||||| ||||||||||||||| || | | | ||||| ||||  |||  |||||||||    
T  32528944 tccgtttggtgcacatgatatgataaagacgggatatgataaaaagttagataaagataggatatgatactgatatgatagacacttattctatcatgtg 32529043  T
Q  209 tttggggcaaacatgataa 227  Q
    ||||| ||| | |||||||    
T  32529044 tttggtgcatagatgataa 32529062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 42458795 - 42458843
Alignment:
Q  179 taacatgatggacatctatcatatcatgtgtttggggcaaacatgataa 227  Q
    ||||||||| ||||| |||||| |||||||||||| ||| |||||||||    
T  42458795 taacatgatagacatgtatcatgtcatgtgtttggtgcacacatgataa 42458843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 40627154 - 40626997
Alignment:
Q  110 ccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatcatgtgt 209  Q
    |||||||||||| | |||||||||||||||| ||| ||||||||||||||||| ||||  ||| || ||||||| ||| ||||  |||||| ||||||||    
T  40627154 ccgtttggtgcgtaggatatgatagagacatcataggattagaagttggataaggatataatatgatagtaacaagatagacacttatcatttcatgtgt 40627055  T
Q  210 ttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgtttgat 267  Q
    ||||  || ||||||||| || ||||||||  ||||||||| ||||||| ||||||||    
T  40627054 ttggtacacacatgataagaaggaggatattcttattttattatatcatgtgtttgat 40626997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 266
Target Start/End: Complemental strand, 12027484 - 12027329
Alignment:
Q  110 ccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatcatgtgt 209  Q
    ||||||| ||| |||||||| ||||||| |  ||||||| ||||| ||||||| |||| |||| || ||| | || ||  |||| |||||| ||||||||    
T  12027484 ccgtttgatgcacatgatataatagagataagatatgataagaagctggataaggatatgatatgatagtgatataata-acatttatcatgtcatgtgt 12027386  T
Q  210 ttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgtttga 266  Q
    || ||||| |||||||||||| |||||||||||||||||||| |||||  |||||||    
T  12027385 tttgggcacacatgataaaaaagaggatatcattattttatcctatcacgtgtttga 12027329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 29463268 - 29463218
Alignment:
Q  221 atgataaaaatgaggatatcattattttatcatatcatatgtttgatacac 271  Q
    ||||||| || || |||| ||||||||||||||||||||||||||||||||    
T  29463268 atgataagaaagatgatagcattattttatcatatcatatgtttgatacac 29463218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 31514561 - 31514500
Alignment:
Q  111 cgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggata 172  Q
    |||||||||| || |||||||||||||||| ||||||| | || ||||||||||||| ||||    
T  31514561 cgtttggtgcacaagatatgatagagacatgatatgataaaaaattggataaagatatgata 31514500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 13526983 - 13527031
Alignment:
Q  105 agagtccgtttggtgcgcatgatatgatagagacataatatgattagaa 153  Q
    ||||||| |||||||| |||||||||||||||| || ||||||||||||    
T  13526983 agagtccatttggtgcacatgatatgatagagatatgatatgattagaa 13527031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 1529355 - 1529413
Alignment:
Q  114 ttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggata 172  Q
    ||||||| |||||||||||||||| || ||| ||||||||  |||||||||||| ||||    
T  1529355 ttggtgcacatgatatgatagagatatgataagattagaaaatggataaagatatgata 1529413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 6279193 - 6279123
Alignment:
Q  195 tatcatatcatgtgtttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgtttg 265  Q
    ||||||||||||||||||| |   ||||||||||||| |||||  ||| |||||||||| ||| |||||||    
T  6279193 tatcatatcatgtgtttggtgaccacatgataaaaattaggattgcatcattttatcatgtcagatgtttg 6279123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 1345441 - 1345405
Alignment:
Q  112 gtttggtgcgcatgatatgatagagacataatatgat 148  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  1345441 gtttggtgcgcatgataagatagagacatgatatgat 1345405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 7671273 - 7671205
Alignment:
Q  102 ttaagagtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagatagga 170  Q
    ||||||||| ||||| ||| |||||||||||||||| || |||||||  |||| | ||||| |||||||    
T  7671273 ttaagagtctgtttgatgcacatgatatgatagagatatgatatgatatgaagctagataaggatagga 7671205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 265
Target Start/End: Original strand, 45817928 - 45818082
Alignment:
Q  110 ccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatcatgtgt 209  Q
    |||||||||||| || ||| || |||||||| ||||||||||||||||||||| ||||  |||| | | ||||||||| ||||  ||||||||| |  ||    
T  45817928 ccgtttggtgcgtattataggacagagacatgatatgattagaagttggataaggatattataaaataataacatgatagacacttatcatatcttacgt 45818027  T
Q  210 ttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgtttg 265  Q
    ||||   | ||||||||| || || |||| |||||||||||| |||||||||||||    
T  45818028 ttggtatacacatgataagaaaga-gataacattattttatcctatcatatgtttg 45818082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 120 - 266
Target Start/End: Complemental strand, 40417766 - 40417621
Alignment:
Q  120 cgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatcatgtgtttggggcaaa 219  Q
    |||| ||||||||||| ||   ||||||| ||||| ||||||| ||||||||| || ||| |||||||  |||| ||||||||||| ||||||| |||      
T  40417766 cgcaggatatgatagacacgggatatgataagaagctggataaggataggatatgacagtgacatgata-acatttatcatatcatatgtttggtgcacg 40417668  T
Q  220 catgataaaaatgaggatatcattattttatcatatcatatgtttga 266  Q
    |||||||| ||  | |||| ||||||||||||||||||| |||||||    
T  40417667 catgataagaaatatgatagcattattttatcatatcatgtgtttga 40417621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 20525625 - 20525556
Alignment:
Q  195 tatcatatcatgtgtttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgttt 264  Q
    ||||||||||||||||||| ||| | ||||||| || || ||||| ||||||||||||||||||||||||    
T  20525625 tatcatatcatgtgtttggtgcagatatgataagaaagatgatattattattttatcatatcatatgttt 20525556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 265
Target Start/End: Complemental strand, 50877016 - 50876874
Alignment:
Q  123 atgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatcatgtgtttggggcaaacat 222  Q
    |||||| ||||||||||| || |||||| ||||||||||| |||| |||| || | | |||||||  ||| ||||||||||||| |||||| | | ||||    
T  50877016 atgataggatagagacatgatgtgattataagttggataaggatatgatacgataatgacatgatatacacctatcatatcatgcgtttggtggacacat 50876917  T
Q  223 gataaaaatgaggatatcattattttatcatatcatatgtttg 265  Q
    ||||||||  | |||| || ||| ||||| |||||||||||||    
T  50876916 gataaaaaatatgataacaatatattatcttatcatatgtttg 50876874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 258
Target Start/End: Complemental strand, 22205480 - 22205324
Alignment:
Q  102 ttaagagtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcata 201  Q
    ||||||| |||||||||| ||| |||| ||||||| ||  ||||||| ||||| |||||||||| |||| | || ||| | | |||  |||| |||| ||    
T  22205480 ttaagagcccgtttggtgtgcaggataggatagaggcaggatatgataagaagctggataaagaaaggaaatgacagtgagaggataaacatttatccta 22205381  T
Q  202 tcatgtgtttggggcaaacatgataaaaatgaggatatcattattttatcatatcat 258  Q
    ||||| |||||| ||| || ||||||||| || |||| |||||||||||| ||||||    
T  22205380 tcatgcgtttggtgcatacttgataaaaaagatgatagcattattttatcgtatcat 22205324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 37910390 - 37910527
Alignment:
Q  108 gtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatcatgt 207  Q
    ||||||||| ||  || |||| |||||||||||||||||||   ||  |||| |||||||||||| || | | |||||||  ||||  ||||||||||||    
T  37910390 gtccgtttgatgatcaggataggatagagacataatatgatataaaactggacaaagataggatatgataatgacatgataaacattaatcatatcatgt 37910489  T
Q  208 gtttggggcaaacatgataaaaatgaggatatcattat 245  Q
    |||||  ||| ||||||||| ||  |||||||||||||    
T  37910490 gtttgatgcacacatgataacaaacaggatatcattat 37910527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 14518637 - 14518562
Alignment:
Q  190 acatctatcatatcatgtgtttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgtttg 265  Q
    |||| ||||||||||||||||||  ||  ||| ||||| || || ||||  |||||||||||||||||||||||||    
T  14518637 acatgtatcatatcatgtgtttgatgcgcacaagataagaaagatgataatattattttatcatatcatatgtttg 14518562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 33235200 - 33235263
Alignment:
Q  109 tccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggata 172  Q
    |||||||||||||||| ||| ||||||||||| ||||||| |  |||||||||| |||| ||||    
T  33235200 tccgtttggtgcgcataataggatagagacatgatatgataaagagttggataaggatatgata 33235263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 26634551 - 26634611
Alignment:
Q  108 gtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagatag 168  Q
    ||||||||| |||| ||||||||||| |||||| |||  |||||||  |||||||||||||    
T  26634551 gtccgtttgatgcgtatgatatgatacagacatgatagaattagaaaatggataaagatag 26634611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 250
Target Start/End: Complemental strand, 29127572 - 29127428
Alignment:
Q  105 agagtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatca 204  Q
    ||||||||||||||||||||||||||||||| |||| ||| ||| ||||  ||||||| |||| |||| || ||| | | |||  |||| |||| | |||    
T  29127572 agagtccgtttggtgcgcatgatatgatagaaacatgataggataagaaactggataaggatatgatatgatagtgataggataaacatttatcttgtca 29127473  T
Q  205 tgtgtttggggcaaacatgataaaaatgaggatatcattattttat 250  Q
    || |||||| ||| || ||||||||| || |||| |||||||||||    
T  29127472 tgcgtttggtgcacacttgataaaaa-gatgatagcattattttat 29127428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 265
Target Start/End: Complemental strand, 39595563 - 39595401
Alignment:
Q  102 ttaagagtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcata 201  Q
    ||||| ||||||||||| |||||||||  ||| ||| |  |||| || | ||||||||||| ||||| ||| || ||| ||||||| | ||  |||  ||    
T  39595563 ttaagtgtccgtttggtacgcatgatagaatatagataagatataataaaaagttggataaggatag-ataggatagtgacatgatagtcacttatgcta 39595465  T
Q  202 tcatgtgtttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgtttg 265  Q
    |||| ||||| | ||| ||||||||| ||| | ||||||||||||||||| | |||| ||||||    
T  39595464 tcatatgtttagtgcacacatgataagaatcatgatatcattattttatcctgtcatttgtttg 39595401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 2333303 - 2333374
Alignment:
Q  156 tggataaagataggataagaaagtaacatgatggacatctatcatatcatgtgtttggggcaa-acatgataa 227  Q
    ||||||| ||||||||| || ||||||| |||  |||| ||||||||||||||||||| |||| |||||||||    
T  2333303 tggataaggataggatacgatagtaacaagataaacat-tatcatatcatgtgtttggtgcaacacatgataa 2333374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 4075632 - 4075742
Alignment:
Q  103 taagagtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatat 202  Q
    |||| ||||||||||||||||||||| ||||||| ||  ||| ||| ||||| |||| || ||||||||| || ||| ||| ||| ||||  |||| |||    
T  4075632 taagggtccgtttggtgcgcatgataggatagagtcaagataggataagaagatggacaaggataggatatgatagtgacaagatagacacttatcctat 4075731  T
Q  203 catgtgtttgg 213  Q
    |||||||||||    
T  4075732 catgtgtttgg 4075742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 47142964 - 47143029
Alignment:
Q  200 tatcatgtgtttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgtttg 265  Q
    |||||| | ||||| ||| ||||||||||||| | ||||||||||||||||| |||||||||||||    
T  47142964 tatcatatatttggtgcacacatgataaaaatcatgatatcattattttatcttatcatatgtttg 47143029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 32712046 - 32712162
Alignment:
Q  111 cgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatcatgtgtt 210  Q
    |||||||||| ||||||| |||||| |||| ||||||| || ||||||||||  ||| |||| || ||||||||||| || |  |||  ||||||| |||    
T  32712046 cgtttggtgcacatgataggatagacacatgatatgataaggagttggataagaatatgatatgatagtaacatgatagatacttatgctatcatgcgtt 32712145  T
Q  211 tggggcaaacatgataa 227  Q
    ||| ||| |||||||||    
T  32712146 tggtgcacacatgataa 32712162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 42471293 - 42471394
Alignment:
Q  158 gataaagataggataagaaagtaacatgatggacatctatcatatcatgtgtttggggcaaacatgataaaaatgaggatatcattattttatcatatca 257  Q
    |||||||||| |||| || | | | ||||| ||||| ||||||||||||||||||| ||| ||||||||| ||  | |||| ||||| ||||||||||||    
T  42471293 gataaagatatgatatgataatgatatgatagacatttatcatatcatgtgtttggtgcacacatgataagaaatatgatagcatta-tttatcatatca 42471391  T
Q  258 tat 260  Q
    |||    
T  42471392 tat 42471394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 255
Target Start/End: Complemental strand, 30952271 - 30952120
Alignment:
Q  103 taagagtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatat 202  Q
    |||| |||||||||||||||||||||  |||||||||| |||||||  ||| ||||||| ||| | |||| || |   | |||||  |||| |||| |||    
T  30952271 taagggtccgtttggtgcgcatgatagaatagagacatgatatgatatgaaattggatagagacatgatatgatatagatatgat-aacatttatcctat 30952173  T
Q  203 catgtgtttggggcaaacatgataaaaatgaggatatcattattttatcatat 255  Q
    ||||||||||  ||  |||||||||  || |||||| || |||||||||||||    
T  30952172 catgtgtttgatgcgcacatgataagcatcaggataacaatattttatcatat 30952120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 44108943 - 44108879
Alignment:
Q  200 tatcatgtgtttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgttt 264  Q
    |||||||||||||||||| ||||||||| ||  | |||| |||||||||||||||| || |||||    
T  44108943 tatcatgtgtttggggcacacatgataataaacatgatagcattattttatcatattatgtgttt 44108879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 49288436 - 49288374
Alignment:
Q  110 ccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggata 172  Q
    |||||||||||||||||||||||| ||| || ||||||| ||||| || |||| |||| ||||    
T  49288436 ccgtttggtgcgcatgatatgatatagatatgatatgataagaagctgaataaggatatgata 49288374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 9381885 - 9381958
Alignment:
Q  113 tttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatga 186  Q
    |||||||||||||||| ||||||||| | | | ||||||||| ||||||| |||| |||| || ||||| ||||    
T  9381885 tttggtgcgcatgataggatagagacctgagaggattagaagatggataaggatatgatatgatagtaatatga 9381958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 5786442 - 5786386
Alignment:
Q  112 gtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagatag 168  Q
    |||||||||||| |||| |||| |||||| ||| ||||||||| ||||||| |||||    
T  5786442 gtttggtgcgcaagataggataaagacatgataggattagaagctggataaggatag 5786386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 50004176 - 50004299
Alignment:
Q  103 taagagtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatat 202  Q
    |||| ||||||||||||| ||| |||||||||||| |  ||| |||  ||| ||||| || ||||||| |||| |  ||||||||  |||| |||| |||    
T  50004176 taagggtccgtttggtgcacatcatatgatagagatacgataggatatgaaattggagaaggataggaaaagatataaacatgat-aacatttatcctat 50004274  T
Q  203 catgtgtttggggcaaacatgataa 227  Q
    ||| ||||||| ||| |||||||||    
T  50004275 catatgtttggtgcacacatgataa 50004299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1822 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1822
Description:

Target: scaffold1822; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 501 - 616
Alignment:
Q  110 ccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaacatgatggacatctatcatatcatgtgt 209  Q
    |||||||| || ||||||| |||||| |||| ||| ||| | ||  ||||||| ||||||||| |  ||| |||||||  ||||||||| ||||||||||    
T  501 ccgtttggcgcacatgataggatagacacatgataggataaaaaaatggataaggataggatatggtagtgacatgata-acatctatcctatcatgtgt 599  T
Q  210 ttggggcaaacatgata 226  Q
    |||| ||| ||||||||    
T  600 ttggtgcacacatgata 616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 4086959 - 4087010
Alignment:
Q  120 cgcatgatatgatagagacataatatgattagaagttggataaagataggat 171  Q
    |||| ||||||||||| |||| ||||||||||||| ||||||| ||||||||    
T  4086959 cgcaggatatgatagacacatgatatgattagaagctggataaggataggat 4087010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 6149156 - 6149217
Alignment:
Q  111 cgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggata 172  Q
    |||||||||| ||||||| ||||||||||| ||| ||| | ||||||||||| |||| ||||    
T  6149156 cgtttggtgcacatgataggatagagacatgataggataaaaagttggataaggatatgata 6149217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 3304 - 3377
Alignment:
Q  108 gtccgtttggtgcgcatgatatgatagagacataatatgattagaagttggataaagataggataagaaagtaa 181  Q
    ||||||| |||| ||| |||| ||||||||| | ||| ||||||||||||||||| |||| |||| || |||||    
T  3304 gtccgttaggtgtgcaggataggatagagacgtgatacgattagaagttggataaggatatgataggatagtaa 3377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University