View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20648_high_11 (Length: 295)
Name: NF20648_high_11
Description: NF20648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20648_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 34680980 - 34680730
Alignment:
| Q |
20 |
ctaatctcatgtttttatgaattttttataattggatcaacatgggccattaggccatataattagactctaataccatgttggatttttggcacaaacc |
119 |
Q |
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| T |
34680980 |
ctaacctcatgtttttatgaattttttataattggatcaacatgggccattaggccatataattagactctaataccatgttggatttttggcacaaacc |
34680881 |
T |
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| Q |
120 |
aatcaataaggagtgtgcgcaatataaattagtgtacttgcgtaggatttgggttcattctctcatatattagcacatacaagactttatagttttccat |
219 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34680880 |
aatcagtaaggagtgtgcgcaatataaattagtgtacatgcgtaggatttgggttcattctctcatatattagcacatacaagactttatag-tttccat |
34680782 |
T |
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| Q |
220 |
tcaacatcaaaatactccaaccaaatagttggtcatgatggtggctgtttta |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34680781 |
tcaacatcaaaatactccaaccaaatagttggtcatgatggtggctgtttta |
34680730 |
T |
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