View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20648_high_12 (Length: 286)
Name: NF20648_high_12
Description: NF20648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20648_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 4070787 - 4070525
Alignment:
| Q |
14 |
attacgataaataaatttagattaaggagtaaagtcatgaaaaaccaccaagctcattaaaaagaaactacttgtgtgaacacattttgattacatttta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4070787 |
attacgataaataaatttagattaaggagtaaagtcatgaaaaaccaccaagctcattaaaaagaaactacttgtgtgaacacattttgattacatttta |
4070688 |
T |
|
| Q |
114 |
atatggtacaaacgattgataatattgaataaaatgagtttacatgaatgaaatatgagtatttattaaaagaaagcacaaatttatgttttgtgtatcn |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4070687 |
atatggtacaaacgattgataatattgaataaaatgagtttacatgaatgaaatatgagtatttattaaaagaaagcacaaatttatgttttgtgtatct |
4070588 |
T |
|
| Q |
214 |
nnnnnnnnnnnnnnnngaggttatgttatgtgtactaggacgtgattttggtttgctaaattt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4070587 |
tttttgtttttgttttgaggttatgttatgtgtactaggacgtgattttggtttgctaaattt |
4070525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University