View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20648_high_4 (Length: 433)
Name: NF20648_high_4
Description: NF20648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20648_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 172 - 415
Target Start/End: Original strand, 37995713 - 37995952
Alignment:
| Q |
172 |
ttcatttttaatctttacaaatnnnnnnnccccacatttttctttagcatggttgtgacccaggaatgctgacagacaaattttaatacagtcactaaaa |
271 |
Q |
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| T |
37995713 |
ttcatttttaatctttacaaataaaaaaaacccacatttttctttagcatggttatgacccaggaatgctgacagacaaattttaatacagtcactaaaa |
37995812 |
T |
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| Q |
272 |
atgacaattaacttaatctttacaaacaaaaacatcccacatttttctttagcatgttttatgacccaagaatgctgctgatagacaaattttaatacag |
371 |
Q |
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| T |
37995813 |
atgacaattaacttaatctttacaaacaaaaacatcccacatttttctttagcatg-tttatgacccaagaa---tgctgatagacaaattttaatacag |
37995908 |
T |
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| Q |
372 |
acactaaaaacgaataaaattaactcttaatctaacataatcat |
415 |
Q |
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| T |
37995909 |
acactaaaaacgactaaaattaactcttaatctaacataatcat |
37995952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37995554 - 37995657
Alignment:
| Q |
1 |
caaaggtcaatttaggatcccataagtatgtgtaccagcaaactaagaggtgacgaatcattgaagatctatgaagcacctataatgacactgacatgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37995554 |
caaaggtcaatttaggatcccataagtatgtgtaccagcaaactaagaggtgacgaatcattgaagatctatgaagcacctataatgacacggacatgct |
37995653 |
T |
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| Q |
101 |
aagg |
104 |
Q |
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|||| |
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| T |
37995654 |
aagg |
37995657 |
T |
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