View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20648_low_1 (Length: 518)

Name: NF20648_low_1

Description: NF20648

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20648_low_1

[»] chr8 (2 HSPs)

[»] chr4 (1 HSPs)

Alignment Details

Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 446; E-Value: 0

Query Start/End: Original strand, 24 - 518

Target Start/End: Original strand, 39518916 - 39519410

Alignment:

Q	24	agaacctgtgttagtgcatttgacttgagagaacctctactgtgtatggcacagtagtagagcctggagatagcaatttaacaaagattttgaatgaagt	123	Q
		\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39518916	agaacctgtattggtgcatttgacttgagagaacctctactgtgtatggcacagtagtagagcctggagatagcaatttaacaaagattttgaatgaagt	39519015	T

Q	124	tttatttgctgaaattataaaacgagtgactagcaaagtgaaccgagactagtagctttatttacatcgaatgtgtcacgtgcgtaacttggagcatatg	223	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|
T	39519016	tttatttgctgaaattataaaacgagtgactagcaaagtgaaccgagactagtagctttatttacatcgaatgtgtcacgtgtttaacttggagcataag	39519115	T

Q	224	tattctttttcattagaggatattaattgctgatgtggttggtgtattg--taatatcattgggatggctggatacaggacgtatgatcgcatgattaat	321	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	39519116	tattctttttcattagaggatattaattgctgatgtggttggtgtattgcataatatcatt-ggatggctggatacaggacgtatgatagcatgattaat	39519214	T

Q	322	tgaggttggcatgatggctagtattagtagaaatggcacggtgtatgttaatttgcatgatgattcatgattgtagttaggtttgacacaagttagggct	421	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39519215	tgaggttggcatgatggctagtattagtagaaatggcacggtgtatgttaatttgcatgatgattcatgattgtagttaggtttgacacaagttagggct	39519314	T

Q	422	tgtatcctttcccttgaaaccttgtgaggttaattcagcgaattctctttcactaaaaaatagttttgtacaacccctttgaaagctctcattgctg	518	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39519315	tgtatcctttcccttgaaaccttgtgaggttaattcagcgaattctctttcactaaaaaatagttttgtacaa-ccctttgaaagctctcattgctg	39519410	T

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Target: chr8; HSP #2

Raw Score: 95; E-Value: 3e-46

Query Start/End: Original strand, 388 - 518

Target Start/End: Complemental strand, 39539580 - 39539452

Alignment:

Q	388	atgattgtagttaggtttgacacaagttagggcttgtatcctttcccttgaaaccttgtgaggttaattcagcgaattctctttcactaaaaaatagttt	487	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	39539580	atgattgtagttaggcttgacacaa-ttagggcttgtatcctttcccttcaaaccttatgaggttaattcagcaaattctctt-cactcaaaaatagttt	39539483	T

Q	488	tgtacaacccctttgaaagctctcattgctg	518	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39539482	tgtacaacccctttgaaagctctcattgctg	39539452	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 38; E-Value: 0.000000000003

Query Start/End: Original strand, 440 - 518

Target Start/End: Original strand, 2552801 - 2552880

Alignment:

Q	440	accttgtgaggttaattcagcgaattctctttcactaaaaaat--agttttgtacaacccctttgaaagctctcattgctg	518	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2552801	accttgtgaggttaattcagcaaatcctcttctacttaaaaatagagttttatacaa-ccctttgaaagctctcattgctg	2552880	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]