View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20648_low_13 (Length: 273)
Name: NF20648_low_13
Description: NF20648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20648_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 55245027 - 55245270
Alignment:
| Q |
17 |
aaaaggtgaaggttgagatcagatgaatttatcaatgaaatgaaata-tggtaagcagaaaaagtaatgaaaccctcgtttcgtttcacttgaccaaaag |
115 |
Q |
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| T |
55245027 |
aaaaggtgaaggttgagatgagatgaatttatgaatgaaatatggtagtcccaagcagaaaaagtaatgaaaccctcgtttcgtttcacttgaccaaaag |
55245126 |
T |
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| Q |
116 |
aaaggaccagtacttggtagccacgatgtgtccctatcttcatgtgaaacagtgtctttttccttaccttcttttacactagaaaacaatcttaattcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55245127 |
aaaggaccagtacttggtagccacgatgtgtccctatcttcatgtgaaacagtgtctttttccttaccttcttttacactagaaaacaatcttaattcaa |
55245226 |
T |
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| Q |
216 |
caaagtctgatgaaaatccttcaaacttatatcatataccatct |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55245227 |
caaagtctgatgaaaatccttcaaacttatatcatataccatct |
55245270 |
T |
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