View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20648_low_15 (Length: 250)
Name: NF20648_low_15
Description: NF20648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20648_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 39519519 - 39519731
Alignment:
| Q |
8 |
cttcttccttgagaaggctagaattggtgaatatgttggtgtaaatatttgttaacccttcaatttccatcagaccgtcccaagccgtgaggtatatttc |
107 |
Q |
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| T |
39519519 |
cttcttcgttgagaaggctagaattggtgaatatgttggtgtaaatatttgttaacccttcaatttccatcagaccgtccccagccgtgaggtatatttc |
39519618 |
T |
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| Q |
108 |
atgtttggcagaatagaaagagattgaagtat----taaagctcttattaggtgtgggggaacccttcccgtgttctctcactccaaatgcgggctaact |
203 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39519619 |
atgtttggcagaatagaaagagattgaagtattaaataaagctcttattaggtgtgggggaacccttcccgtgttctctcactccaaatgcgggctaact |
39519718 |
T |
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| Q |
204 |
atcaagtcccagg |
216 |
Q |
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|||||| |||||| |
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| T |
39519719 |
atcaagccccagg |
39519731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 47 - 216
Target Start/End: Complemental strand, 39539296 - 39539124
Alignment:
| Q |
47 |
tgtaaatatttgttaacccttcaatttccatcagaccgtcccaagccg---tgag-gtatatttcatgtttggcagaatagaaagagattgaagtattaa |
142 |
Q |
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||||||||| ||||||||||||||||||||||||||| || ||||||| || | ||||||| |||| ||||| ||||||||||||||||||||||||| |
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| T |
39539296 |
tgtaaatatatgttaacccttcaatttccatcagaccatctcaagccgcggtgtgtgtatatt-catggttggccgaatagaaagagattgaagtattaa |
39539198 |
T |
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| Q |
143 |
agctcttattaggtgtgggggaacccttcccgtgttctctcactccaaatgcgggctaactatcaagtcccagg |
216 |
Q |
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| T |
39539197 |
agctctcattaggtgtgggggaacacttcccgtgttctttcactccaaatgcgggctaactctcaagtcccagg |
39539124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 2552989 - 2553192
Alignment:
| Q |
8 |
cttcttccttgagaaggctagaattggtgaatatgttggtgtaaatatttgttaacccttcaatttccatcagaccgtcccaagccgtgaggtatat-tt |
106 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||||||||||||| || | ||| | || ||||| || |
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| T |
2552989 |
cttcttcattgagaaggctagacttggtgaatatgttggtgtaaatatctgttaatccttcgatttccatcagaccatctccagctgccagatatatatt |
2553088 |
T |
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| Q |
107 |
catgtttggcagaatagaaagagattgaagtattaaagc--tcttattaggtgtgggggaacccttcccgtgttctctcactccaaatgcgggctaacta |
204 |
Q |
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| T |
2553089 |
cgtggttggcggaatagaaagagattgaagtattaaagctgtctcattaggtgtgaggggacacttcccacgttgt----ctccaaatgcgggctaactc |
2553184 |
T |
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| Q |
205 |
tcaagtcc |
212 |
Q |
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|| ||||| |
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| T |
2553185 |
tccagtcc |
2553192 |
T |
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