View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20648_low_16 (Length: 250)
Name: NF20648_low_16
Description: NF20648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20648_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14250792 - 14250554
Alignment:
| Q |
1 |
aagtggaagacttcccttaccttacgagccggttttgtaaaggtcgtattagaccctacccaaattctaagatggtatcaaactctatcaactacatgtt |
100 |
Q |
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| T |
14250792 |
aagtggaagacttcccttaccttacgagccggttttgtaaaggtcgtattagaccctacccaaattctaagatggtatcaaactctatcaactacatgtt |
14250693 |
T |
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| Q |
101 |
tggtcactcggatcatgctccagatgcgatgttttgtaaggttgagttagacccaacccaatttttaagaatcggataaagatcgggtctacaatccaaa |
200 |
Q |
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| T |
14250692 |
tggtcactcggatcatgctccagatgtgatgttttgtaaggttgagttagacccaacccaatttttaagaatcggataaagatcgggtctacaatccaaa |
14250593 |
T |
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| Q |
201 |
gtcagaacgtgagttgtccaatcttaatcttacacttca |
239 |
Q |
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| T |
14250592 |
gtcggaacgtgagttgtccgatcttaatcttacacttca |
14250554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 22199025 - 22198986
Alignment:
| Q |
131 |
gttttgtaaggttgagttagacccaacccaatttttaaga |
170 |
Q |
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| T |
22199025 |
gttttgtaaggttgagttaggcccaacccaaattttaaga |
22198986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 21641444 - 21641405
Alignment:
| Q |
131 |
gttttgtaaggttgagttagacccaacccaatttttaaga |
170 |
Q |
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| T |
21641444 |
gttttgtaaggttgagttaggcccaacccaaattttaaga |
21641405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 10239511 - 10239549
Alignment:
| Q |
131 |
gttttgtaaggttgagttagacccaacccaatttttaag |
169 |
Q |
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| T |
10239511 |
gttttgtaaggttgagttaggcccaacccaagttttaag |
10239549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 17557746 - 17557706
Alignment:
| Q |
132 |
ttttgtaaggttgagttagacccaacccaatttttaagaat |
172 |
Q |
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| T |
17557746 |
ttttgtaaggttgagttaggcccaacccaaattctaagaat |
17557706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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