View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20648_low_17 (Length: 243)
Name: NF20648_low_17
Description: NF20648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20648_low_17 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 14789134 - 14789376
Alignment:
| Q |
1 |
tatatgctttgacattattannnnnnnctgattgatcccagcacgtataagttcaacttgtgacctactccaatacttaattcattcatcaactcactca |
100 |
Q |
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| T |
14789134 |
tatatgctttgacattattatttttttctgattgatcccagcacgtataagttcaacttgtgacctactccaatacttaattcattcatcaactcactca |
14789233 |
T |
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| Q |
101 |
tgctatcacattttattttggttaaaatatgtttagaataaagggggatgaac-aaaaatcatgagtgtaaaccaattttacacatgctttcagtatggt |
199 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14789234 |
tgctctcacattttattttggttaaaatatgtttagaataaa-ggggatgaacaaaaaatcatgagtgtaaaccaattttacacatgcttttggtatggt |
14789332 |
T |
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| Q |
200 |
ggtgttcgtagttcgaacttcagaccttgcatatattattcatt |
243 |
Q |
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| T |
14789333 |
ggtgttcgtagttcgaaattcaaaccttacatatattattcatt |
14789376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 21936021 - 21936063
Alignment:
| Q |
196 |
tggtggtgttcgtagttcgaacttcagaccttgcatatattat |
238 |
Q |
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| T |
21936021 |
tggtggtgtccgtagttcgaactccggaccttgcatatattat |
21936063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 15291680 - 15291725
Alignment:
| Q |
198 |
gtggtgttcgtagttcgaacttcagaccttgcatatattattcatt |
243 |
Q |
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| T |
15291680 |
gtggtgtccgaagttcgaacctcaaaccttgcatatattattcatt |
15291725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 17216131 - 17216164
Alignment:
| Q |
210 |
gttcgaacttcagaccttgcatatattattcatt |
243 |
Q |
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| T |
17216131 |
gttcgaacttcagaccttgcatatattatgcatt |
17216164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 20403170 - 20403203
Alignment:
| Q |
210 |
gttcgaacttcagaccttgcatatattattcatt |
243 |
Q |
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| T |
20403170 |
gttcgaacttcagaccttgcatatattatgcatt |
20403203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 29774435 - 29774407
Alignment:
| Q |
210 |
gttcgaacttcagaccttgcatatattat |
238 |
Q |
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| T |
29774435 |
gttcgaacttcagaccttgcatatattat |
29774407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 45396622 - 45396590
Alignment:
| Q |
211 |
ttcgaacttcagaccttgcatatattattcatt |
243 |
Q |
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| T |
45396622 |
ttcgaacttcagaccttgcatatattatgcatt |
45396590 |
T |
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