View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20648_low_18 (Length: 238)
Name: NF20648_low_18
Description: NF20648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20648_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 4071172 - 4071028
Alignment:
| Q |
18 |
atttccataaaccaaaggaaagaaattcagctcacaatggattactcttcaggttatagtcaaccatttattatccctcaattattctttcgctcctttt |
117 |
Q |
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| T |
4071172 |
atttccataaaccaaaggaaagaaattcagctcacaatggattactcttcaggttatagtcaaccatttattatccctcaattattctttcactcctttt |
4071073 |
T |
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| Q |
118 |
aacttccacgtatatatctttagtttccccttcccataaataaat |
162 |
Q |
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| T |
4071072 |
aaattccacgtatatatctttagtttccccttcccataaataaat |
4071028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 4070977 - 4070934
Alignment:
| Q |
195 |
agttgtaaccaaaaaataatatagacacacaagtaagtatctct |
238 |
Q |
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| T |
4070977 |
agttgtaaccaaaaaataatatagacacacaagtaagtatctct |
4070934 |
T |
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