View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20648_low_3 (Length: 444)

Name: NF20648_low_3
Description: NF20648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20648_low_3
NF20648_low_3
[»] chr4 (9 HSPs)
chr4 (17-302)||(49486439-49486711)
chr4 (288-431)||(49486198-49486341)
chr4 (319-431)||(49703166-49703278)
chr4 (337-429)||(49532526-49532618)
chr4 (210-248)||(7694009-7694047)
chr4 (210-251)||(1137742-1137783)
chr4 (210-247)||(8469376-8469413)
chr4 (214-251)||(43824313-43824350)
chr4 (20-60)||(49532723-49532763)
[»] chr2 (4 HSPs)
chr2 (210-251)||(41809244-41809285)
chr2 (210-251)||(1160670-1160711)
chr2 (210-251)||(11063518-11063559)
chr2 (213-249)||(22681187-22681223)
[»] chr6 (4 HSPs)
chr6 (210-251)||(6536977-6537018)
chr6 (210-251)||(4420673-4420714)
chr6 (210-251)||(27909637-27909678)
chr6 (187-247)||(33832254-33832309)
[»] chr3 (4 HSPs)
chr3 (210-251)||(24785235-24785276)
chr3 (210-251)||(45432938-45432979)
chr3 (189-251)||(21574520-21574577)
chr3 (210-251)||(42745068-42745109)
[»] chr1 (4 HSPs)
chr1 (188-251)||(4699597-4699655)
chr1 (213-251)||(6279429-6279467)
chr1 (210-251)||(10199407-10199448)
chr1 (210-251)||(28935875-28935916)
[»] chr8 (2 HSPs)
chr8 (210-251)||(2235655-2235696)
chr8 (210-251)||(41606902-41606943)
[»] chr5 (2 HSPs)
chr5 (210-251)||(35963271-35963312)
chr5 (215-251)||(1084125-1084161)
[»] chr7 (1 HSPs)
chr7 (213-249)||(38010746-38010782)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 49486711 - 49486439
Alignment:
Q  17 aacaacattctagaaggcttgccggagcctcaattcacctctgacggctacatgatcctatatacgtatgtttccattcatgatcatatatgctttttgc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49486711 aacaacattctagaaggcttgccggagcctcaattcacctctgacggctacatgatcctatatacgtatgtttccattcatgatcatatatgctttttgc 49486612  T
Q  117 ttgtttttgttttctatttagagcttatctcaactttttgttgccataagtatttatgagactgttgcaaaacttatgaaaacaacttgtgacatgacat 216  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||    
T  49486611 ttgtttttgttttctatttagagcttatctgaactttttgttgccataagtatttatgagactgttgcaaa-------------acttgtgacatgacat 49486525  T
Q  217 gttcataagttgtttttagcgtatttccataagctatgtgagataacatataaaaatagcttataatcaaataatttgagttcatt 302  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  49486524 gttcataagttgtttttagcgtatttccataagctatgtgggataacatataaaaatagcttataatcaaataatttgagttcatt 49486439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 431
Target Start/End: Complemental strand, 49486341 - 49486198
Alignment:
Q  288 taatttgagttcattctctattacttttggccactgttttttctttcttaaattgcaacacaggaccatctacactatgtgcactcaaaggcctcctcat 387  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49486341 taatttgagttgattctctattacttttggccactgttttttctttcttaaattgcaatacaggaccatctacactatgtgcactcaaaggcctcctcat 49486242  T
Q  388 gaatattccgaacaattgtatgaaaagtataaggaaacatttga 431  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  49486241 gaatattccgaacaattgtatgaaaagtacaaggaaacatttga 49486198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 319 - 431
Target Start/End: Complemental strand, 49703278 - 49703166
Alignment:
Q  319 cactgttttttctttcttaaattgcaacacaggaccatctacactatgtgcactcaaaggcctcctcatgaatattccgaacaattgtatgaaaagtata 418  Q
    |||||||||| ||| ||||||||| ||  ||||||||| |||  |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  49703278 cactgtttttccttccttaaattgtaatgcaggaccatttacgttatgtgtactcaaaagcctcctcatgaatattccgaacaattgtatgaaaagtaca 49703179  T
Q  419 aggaaacatttga 431  Q
    |||||||||||||    
T  49703178 aggaaacatttga 49703166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 429
Target Start/End: Complemental strand, 49532618 - 49532526
Alignment:
Q  337 aaattgcaacacaggaccatctacactatgtgcactcaaaggcctcctcatgaatattccgaacaattgtatgaaaagtataaggaaacattt 429  Q
    |||||||||  ||||||| | |||| |||||| ||||||| ||| |||||||| |||||  | | | ||||||||||||||||||||||||||    
T  49532618 aaattgcaatgcaggaccgtttacaatatgtgtactcaaaagccgcctcatgactattctcagccactgtatgaaaagtataaggaaacattt 49532526  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 7694009 - 7694047
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataa 248  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  7694009 atgacatgttcataagttgttttcagcttatttccataa 7694047  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 1137783 - 1137742
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||||||||||||||||| ||  ||||||||||||||    
T  1137783 atgacatgttcataagttgttttcagtttatttccataagct 1137742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 8469376 - 8469413
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccata 247  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  8469376 atgacatgttcataagttgttttcagcttatttccata 8469413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 43824350 - 43824313
Alignment:
Q  214 catgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  43824350 catgttcataagttgttttcagcttatttccataagct 43824313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 49532763 - 49532723
Alignment:
Q  20 aacattctagaaggcttgccggagcctcaattcacctctga 60  Q
    ||||||||||||||||| || |||||||| |||||||||||    
T  49532763 aacattctagaaggctttcctgagcctcatttcacctctga 49532723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 41809244 - 41809285
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  41809244 atgacatgttcataagttgtttttagcttatttccataagct 41809285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 1160670 - 1160711
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  1160670 atgacatgtccataagttgtttttagtttatttccataagct 1160711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 11063559 - 11063518
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||    
T  11063559 atgacatgtccataagttgtttttagcttattttcataagct 11063518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 22681187 - 22681223
Alignment:
Q  213 acatgttcataagttgtttttagcgtatttccataag 249  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  22681187 acatgttcataagctgtttttagcttatttccataag 22681223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 6537018 - 6536977
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  6537018 atgacatgttcataagttgttttcagcttatttccataagct 6536977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 4420714 - 4420673
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    |||||||||||||||| |||||| ||| ||||||||||||||    
T  4420714 atgacatgttcataagctgttttcagcttatttccataagct 4420673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 27909637 - 27909678
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||    
T  27909637 atgacatgtccataagttgttttcagcttatttccataagct 27909678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 33832254 - 33832309
Alignment:
Q  187 aacttatgaaaacaacttgtgacatgacatgttcataagttgtttttagcgtatttccata 247  Q
    ||||||||||||||||||     |||||||||| |||||||||||||||| ||||| ||||    
T  33832254 aacttatgaaaacaactt-----atgacatgtttataagttgtttttagcttattttcata 33832309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 24785276 - 24785235
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  24785276 atgacatgttcataagttgtttttagcttatttacataagct 24785235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 45432938 - 45432979
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  45432938 atgacatgttcataagttgttttcagcttatttccataagct 45432979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 21574577 - 21574520
Alignment:
Q  189 cttatgaaaacaacttgtgacatgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||||||||||     |||||||||||||||| || ||||||| ||||||||||||||    
T  21574577 cttatgaaaacaactt-----atgacatgttcataagctgcttttagcttatttccataagct 21574520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 42745109 - 42745068
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||||||||||||||||| | | ||||||||||||||    
T  42745109 atgacatgttcataagttgttttcatcttatttccataagct 42745068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 4699597 - 4699655
Alignment:
Q  188 acttatgaaaacaacttgtgacatgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    |||||||||||||||||     |||||||||||||||| |||||||||| |||||| |||||||    
T  4699597 acttatgaaaacaactt-----atgacatgttcataagctgtttttagcttatttctataagct 4699655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 6279467 - 6279429
Alignment:
Q  213 acatgttcataagttgtttttagcgtatttccataagct 251  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  6279467 acatgtccataagttgttttcagcgtatttccataagct 6279429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 10199407 - 10199448
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||    
T  10199407 atgacatgttcataagttgttttcagcttattttcataagct 10199448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 28935875 - 28935916
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||| |||||||| |||||||| ||||||||||||||    
T  28935875 atgacatgtccataagttttttttagcttatttccataagct 28935916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 2235655 - 2235696
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||||||||||| |||||||||  |||||||||||||    
T  2235655 atgacatgttcataagtcgtttttagctcatttccataagct 2235696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 41606902 - 41606943
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    |||||||||||| |||||||||| ||| ||||||||||||||    
T  41606902 atgacatgttcaaaagttgttttcagcttatttccataagct 41606943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 35963312 - 35963271
Alignment:
Q  210 atgacatgttcataagttgtttttagcgtatttccataagct 251  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||    
T  35963312 atgacatgtccataagttgttttcagcttatttccataagct 35963271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 1084125 - 1084161
Alignment:
Q  215 atgttcataagttgtttttagcgtatttccataagct 251  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  1084125 atgttcatgagttgtttttagcttatttccataagct 1084161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 38010782 - 38010746
Alignment:
Q  213 acatgttcataagttgtttttagcgtatttccataag 249  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  38010782 acatgttcataagctgtttttagcttatttccataag 38010746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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