View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20648_low_5 (Length: 426)
Name: NF20648_low_5
Description: NF20648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20648_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 55245578 - 55245302
Alignment:
| Q |
1 |
atttactacacaaaccccactattattttttaaggtaacattaattctagtagctagtttttattattttagtgact----actatataattgtggtatt |
96 |
Q |
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| T |
55245578 |
atttactacacaatccacactattattttt-aaggtaacattaattctagtagctagtttttattgttttagtgactgactactatataattgtggtatt |
55245480 |
T |
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| Q |
97 |
ggtgttgtgttatatagtagatatttgttagaaaaaacaacatatgaatacacaaaatttgttaacgtggtttggccaattttgcttaagggcaaagcgc |
196 |
Q |
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| T |
55245479 |
ggtgttgtgttatatagtagatatttgttagaaaaaacaacatatgaatacacaaaatttgttaacgtggtttggccaattttgcttaagggcaaagcgc |
55245380 |
T |
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| Q |
197 |
atgcagttccttcgtattgaatgaccaagttgagcactttattgcacctgtgaaccttagcttatctgaagattcctt |
274 |
Q |
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| T |
55245379 |
atgcagttccttcgtattgaatgaccaagttgagcacttcattgcacctgtgaaccttagcttgtctgaagattcctt |
55245302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 326 - 415
Target Start/End: Original strand, 55245833 - 55245922
Alignment:
| Q |
326 |
gtagtaattggggtatgtatgggcaacagtgtcgagtagctagcattgtggtccttggtacgatctgactcatactctgtgtctgtgctc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55245833 |
gtagtaattggggtatgtatgggcaacagtgtcgagtagctagcattgtggtccttggtacgatctgactcatactctgtgtctgggctc |
55245922 |
T |
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