View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20648_low_6 (Length: 413)
Name: NF20648_low_6
Description: NF20648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20648_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 14789477 - 14789878
Alignment:
| Q |
1 |
ggacatgaagtgacaaagtaaagagttcttagctatatatccgtgtaaattcaaatgtttacatctatatttgcatattatagaacagttagatcattac |
100 |
Q |
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| T |
14789477 |
ggacatgaagtgacaaagtaaagagttcttagctatatatccatgtaaattcaaatgtttacatctatatttgcatattatacaacagttagatcattac |
14789576 |
T |
|
| Q |
101 |
attggtcatgacatttgaactcatactatatggaaaataagaaacatctttaccaactatattaagcttcctaaactctttattttataataaaaatgac |
200 |
Q |
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| T |
14789577 |
attggtcatgacatttgaactcatactatatggaaaataagaaacatctttaccaactatattaaccttcctaaactctttattttataataaaaatgac |
14789676 |
T |
|
| Q |
201 |
aattaagcattataatcacaagtgttttctggtccttaatctaataccctaagtcagctatacacaaggaaaataattataatttaactatactaaagta |
300 |
Q |
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| T |
14789677 |
aattaaccattataatcacaagtgttttctggtccttaatctaataccctaagtcagctatacacaaggaaaataattgtaatttaactatactaaagta |
14789776 |
T |
|
| Q |
301 |
aaataaagaacatggtcctcacgactacaatctgaacaatcatgcaggcaatgaacaaannnnnnnatatttcatgtctcttatttataagtacttacct |
400 |
Q |
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| T |
14789777 |
aaataaagaacatggtcctcacgactacaatctgaacaatcatgcaggcaatgaacaaatttttttatatttcatgtctcttatttataagtacttacct |
14789876 |
T |
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| Q |
401 |
at |
402 |
Q |
| |
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|| |
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| T |
14789877 |
at |
14789878 |
T |
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