View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20649_high_1 (Length: 729)
Name: NF20649_high_1
Description: NF20649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20649_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 298 - 722
Target Start/End: Original strand, 7259529 - 7259952
Alignment:
| Q |
298 |
cactgagccaatttcacaaacatcaacaattcaccaagttgacaagtttactaataaattattactataaacaaatagtacacctaaatgtaacactttt |
397 |
Q |
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| T |
7259529 |
cactgagccaatttcacaaacatcaacaattcaccaagttgacaagtttactaataaatta---ctataaacaaatagtacacctaaatgtaacactttt |
7259625 |
T |
|
| Q |
398 |
tcgcattgtattctcttattaaccacaagtaaacaacaataatattttttctcacttaatttcaattacatgtatcatttttgacattcacttgacatac |
497 |
Q |
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| T |
7259626 |
tcacattgtattctcttattaaccacaagtaaacaacaataatatttttactcacttaatttcaattacatgtatcatttttgacattcacttgacatac |
7259725 |
T |
|
| Q |
498 |
ttgataaaccaattcaacatgtcctgatgagcctcttctgcattcttaactgcaacttcatcttcaacattgtacctcaatgtccatccatgactaacac |
597 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
7259726 |
ttgataaaccaattcaacatgtcctgatgagcctcttctgcattcttaactgcaacttcatcttcaacactgtatctcaatgtccatccatgactaacac |
7259825 |
T |
|
| Q |
598 |
cagggtacaacttcacaatgctttctaactgtcatagcatacataacttgaagtcttaagttttgaaaggaaatttaattaagataatcaacaaacaatt |
697 |
Q |
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| T |
7259826 |
cagggtacaacttcacaatgctttctaactgtcatagcatacataacttgaagtcttaagttttgaaaggaaatttcattaagataatcaacaaacaatt |
7259925 |
T |
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| Q |
698 |
cttccatagtt--tctcacctttgctt |
722 |
Q |
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| T |
7259926 |
cttccatagtttctctcacctttgctt |
7259952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 7259264 - 7259462
Alignment:
| Q |
18 |
ccaattgtatcaaaatgtacctttttcacatctcattcctttgcatgtatccttaaaaaagaacattgattgcatgccaaagatcaaaagatcttcatta |
117 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7259264 |
ccaattgtatcaaaatgtacctttttcaaatcacattcctttgcatgtatccttaaaaaagaacattgtttgcatgccaaagatcaaaagatcttcatta |
7259363 |
T |
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| Q |
118 |
gcatcaccgtataacttcaaaaagatgtgcatatgttgaaacataactgaaaataaaacatagacaccttaaaagataagtatagtttggaccccctat |
216 |
Q |
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| T |
7259364 |
gcatcaccgtataacttcaaaaagatgtgcatatgttgaaacataactgaaaataaaacatagacaccttaaaagataagtatagtttggaccacctat |
7259462 |
T |
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