View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20649_high_3 (Length: 322)

Name: NF20649_high_3
Description: NF20649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20649_high_3
NF20649_high_3
[»] chr8 (6 HSPs)
chr8 (1-191)||(6580643-6580837)
chr8 (186-311)||(6581019-6581144)
chr8 (263-311)||(6612385-6612433)
chr8 (2-56)||(35793178-35793232)
chr8 (1-37)||(5945357-5945393)
chr8 (2-56)||(22786554-22786608)
[»] scaffold0470 (1 HSPs)
scaffold0470 (263-311)||(1673-1721)
[»] chr4 (1 HSPs)
chr4 (2-52)||(9116266-9116316)
[»] chr3 (5 HSPs)
chr3 (2-52)||(39994200-39994250)
chr3 (2-52)||(4037150-4037200)
chr3 (2-52)||(10688617-10688667)
chr3 (2-52)||(11233515-11233565)
chr3 (2-52)||(49279498-49279548)
[»] chr7 (5 HSPs)
chr7 (1-52)||(36436058-36436109)
chr7 (2-52)||(16876748-16876798)
chr7 (2-52)||(18867959-18868009)
chr7 (2-52)||(23185934-23185984)
chr7 (2-52)||(46425349-46425399)
[»] chr6 (3 HSPs)
chr6 (2-52)||(6139327-6139377)
chr6 (2-52)||(7506641-7506691)
chr6 (2-52)||(9928270-9928320)
[»] chr2 (4 HSPs)
chr2 (2-52)||(3496810-3496860)
chr2 (2-52)||(11226155-11226205)
chr2 (2-52)||(15141889-15141939)
chr2 (2-52)||(19037078-19037128)
[»] chr1 (5 HSPs)
chr1 (2-56)||(26478571-26478625)
chr1 (2-52)||(27032331-27032381)
chr1 (2-52)||(27907712-27907762)
chr1 (2-52)||(51748561-51748611)
chr1 (3-52)||(24671166-24671215)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 6580643 - 6580837
Alignment:
Q  1 atatctctcttttaactactcattctctctcatttaattgatttattttaattattactaaaatacacttgaggcaccaatacatcaaaagtcgatgata 100  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6580643 atatttctcttttaactactcattctctctcatataattgatttattttaattattactaaaatacacttgaggcaccaatacatcaaaagtagatgata 6580742  T
Q  101 accaaaatgagattctttttat--tctatttttctcacaacatggtgttaatgtttttgtcctttgtgg--tctgtcactcttgttttctaggtt 191  Q
     |||||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||||||  |||  ||||||||||||||||| ||||||    
T  6580743 gccaaaatgagattctttttattctctatttttctcacaacatggtgtcaatgcttttgtccttcctggtctctgtcactcttgttttttaggtt 6580837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 186 - 311
Target Start/End: Original strand, 6581019 - 6581144
Alignment:
Q  186 taggtttaagtgaaagagttgaagttgtggtcccttgtgtctctttccttaaaacatctacgatgtcggttcttttatacgtctactatatatgcctcat 285  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||| |||| ||||||||| ||||    
T  6581019 taggtttacttgaaagagttgaagttgtggtcccttgtatctctttccttaaaaaatcttcgatgtgggttcttttatacatctattatatatgcttcat 6581118  T
Q  286 atttctctccttatcccctcctctct 311  Q
    ||||||||||||||||||||||||||    
T  6581119 atttctctccttatcccctcctctct 6581144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 6612385 - 6612433
Alignment:
Q  263 tacgtctactatatatgcctcatatttctctccttatcccctcctctct 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612385 tacgtctactatatatgcctcatatttctctccttatcccctcctctct 6612433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 35793178 - 35793232
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaattatt 56  Q
    ||||||||| ||||||||||||| |||||||||||| | ||||||||||||||||    
T  35793178 tatctctctcttaactactcattatctctcatttaaataatttattttaattatt 35793232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5945393 - 5945357
Alignment:
Q  1 atatctctcttttaactactcattctctctcatttaa 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  5945393 atatctctcttttaactaatcattctctctcatttaa 5945357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 22786554 - 22786608
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaattatt 56  Q
    ||||||||||||||| | ||||||||| |||||||| | ||||| ||||||||||    
T  22786554 tatctctcttttaaccattcattctctttcatttaaataatttactttaattatt 22786608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 1673 - 1721
Alignment:
Q  263 tacgtctactatatatgcctcatatttctctccttatcccctcctctct 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1673 tacgtctactatatatgcctcatatttctctccttatcccctcctctct 1721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 9116316 - 9116266
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  9116316 tatctcttttttaacaactcattctctctcatttaaataatttattttaat 9116266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 39994200 - 39994250
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||||||||| |||||||||||||||| ||| | ||||||||||||    
T  39994200 tatctctcttttaacaactcattctctctcatctaaataatttattttaat 39994250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 4037150 - 4037200
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  4037150 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 4037200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 10688617 - 10688667
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  10688617 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 10688667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 11233515 - 11233565
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  11233515 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 11233565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 49279498 - 49279548
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  49279498 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 49279548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36436109 - 36436058
Alignment:
Q  1 atatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||||| |||||| ||||||||||||||  || ||||||||||||||    
T  36436109 atatctctcttctaactaatcattctctctcatcaaaatgatttattttaat 36436058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 16876798 - 16876748
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  16876798 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 16876748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 18868009 - 18867959
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  18868009 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 18867959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 23185984 - 23185934
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  23185984 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 23185934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 46425399 - 46425349
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  46425399 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 46425349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 6139327 - 6139377
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||||||||| | |||||||||||||| ||| | ||||||||||||    
T  6139327 tatctctcttttaaccattcattctctctcatctaaataatttattttaat 6139377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 7506641 - 7506691
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  7506641 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 7506691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 9928270 - 9928320
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  9928270 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 9928320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 3496860 - 3496810
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  3496860 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 3496810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 11226155 - 11226205
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  11226155 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 11226205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 15141889 - 15141939
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||||||||| ||| |||||||||||| ||| | ||||||||||||    
T  15141889 tatctctcttttaacaacttattctctctcatctaaataatttattttaat 15141939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 19037128 - 19037078
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  19037128 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 19037078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 26478571 - 26478625
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaattatt 56  Q
    ||||| ||||||||| | ||||| ||| |||||||| ||||||||||||||||||    
T  26478571 tatctttcttttaacaattcattatctttcatttaaatgatttattttaattatt 26478625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 27032381 - 27032331
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  27032381 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 27032331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 27907712 - 27907762
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  27907712 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 27907762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 51748561 - 51748611
Alignment:
Q  2 tatctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    ||||| ||||||||| |||||||||||||||| ||| | ||||||||||||    
T  51748561 tatctttcttttaacaactcattctctctcatctaaataatttattttaat 51748611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 24671166 - 24671215
Alignment:
Q  3 atctctcttttaactactcattctctctcatttaattgatttattttaat 52  Q
    |||| ||| ||||| |||||||||||||||||||| | ||||||||||||    
T  24671166 atctttctcttaaccactcattctctctcatttaaataatttattttaat 24671215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University