View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20649_low_2 (Length: 559)
Name: NF20649_low_2
Description: NF20649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20649_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 171 - 520
Target Start/End: Original strand, 3904264 - 3904613
Alignment:
| Q |
171 |
ataatcgtgatgtgcattggaaagatatttgtacttaagaattcgaaaaataaatgatatttatattcaaaaagaattgctaagaaattttcattatatc |
270 |
Q |
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| T |
3904264 |
ataatcgtgatgtgcattggaaagatatttgtatttaagaattcaaaaaataaatgatatttatatttaaaaagaattgctaataaattttcattatatc |
3904363 |
T |
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| Q |
271 |
agcttgtgtatttattttggttttctatttatgtggctgtaaatattagatatattcgcttatgtatatcaatttattttggttagttacttaggtttta |
370 |
Q |
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| T |
3904364 |
agcttttatatttattttagtttgctatttatgtggctgtaaatattagatacattcgcttatgtatatcaatttattttggttagttacttaggtttta |
3904463 |
T |
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| Q |
371 |
tcaatggaacgtcgaaacgtctcgtgttatatagtatcaagcagtctcattccaatttcttttgcttaacaaaatatagcatattaaaaagcattaggga |
470 |
Q |
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| T |
3904464 |
tcaatagaacgtcgaaacgtctcgtgttatatagtatcaagcagtctcattccaatttcttttgcttaacaaaatatagcatattaaaaagcattaggga |
3904563 |
T |
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| Q |
471 |
tctcatggggtgaatctcaattgatttcaacatttagtggttggatttgg |
520 |
Q |
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| T |
3904564 |
tctcatgggttgaatgtcaattgatttcaacattcagtggttggaattgg |
3904613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 3903959 - 3904107
Alignment:
| Q |
19 |
acttgcttctgtgaattcatctgctgagctaatcatcaacactaaatttctgttcaagcaatgtgatatttatttctaaagtataataataaatcatggg |
118 |
Q |
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| T |
3903959 |
acttgcttctgtgaattcatctgctgagcaaatcatcaacactaaatttctgttcaagcaatgtgacatttatttctaaagtataataataaattatggg |
3904058 |
T |
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| Q |
119 |
aagaaaatgttttattttctctcctgtacctgttttaaacaaacttata |
167 |
Q |
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| T |
3904059 |
aagaaaatgttttattttctctcttgtacctgttttaaacaaacttata |
3904107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 3906797 - 3906997
Alignment:
| Q |
20 |
cttgcttctgtgaattcatctgctgagctaatcatcaacactaaatttctgttcaag-caatgtgatatttatttctaaagtataataa-------taaa |
111 |
Q |
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| T |
3906797 |
cttgcttctgtgaattcatctgctgaacaaatcatcaacactaaatttttgttcaaatcaatgtgatttctatttctaaagtataataaataataataga |
3906896 |
T |
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| Q |
112 |
tcatgggaagaaaatgttttattttctctcctgtacctgttttaaacaaacttat----ataaataatcgtgatgtgcattggaaagatatttgtactta |
207 |
Q |
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| T |
3906897 |
tcataggaaggaaatgttctattttctttcttgtacctgttttacacaaacttatatcaataaataatcgtgatgtgcatgggaaagatatttgtattta |
3906996 |
T |
|
| Q |
208 |
a |
208 |
Q |
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| T |
3906997 |
a |
3906997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 304 - 453
Target Start/End: Original strand, 3907561 - 3907711
Alignment:
| Q |
304 |
tggctgtaaatattagatatattcgcttatgtatatcaatttattttggttagttacttaggttttatcaatggaacgtcgaaacgtctcgtgttata-t |
402 |
Q |
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| T |
3907561 |
tggctgtaaattttagatagattcgcttatgtatatcaatttatttgggttagttacttaggttttat-tttgggacgtcgaaacgtctcattttatagt |
3907659 |
T |
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| Q |
403 |
agtatcaagcagtctcattcc-aatttcttttgcttaacaaaatatagcata |
453 |
Q |
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| T |
3907660 |
agtatcaagcaatctcattccaaattttttttgcttaacaaaatatagcata |
3907711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 3906983 - 3907021
Alignment:
| Q |
226 |
gatatttatattcaaaaagaattgctaagaaattttcat |
264 |
Q |
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| T |
3906983 |
gatatttgtatttaaaaagaattgctaagaaattttcat |
3907021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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