View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20649_low_4 (Length: 277)
Name: NF20649_low_4
Description: NF20649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20649_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 4199132 - 4199406
Alignment:
| Q |
1 |
tgaagagcaaaattccgcaattatacgctctaggcgatttcggttgttgatttgagatggaaggttcaaattacatactagataagagagaaatcctttc |
100 |
Q |
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| T |
4199132 |
tgaagagcaaaattccgcaattatacgctctaggcgatttcggttgttgatttgagatggaaggt-caaattacatactagataagagagaaatcctttc |
4199230 |
T |
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| Q |
101 |
acaatttatgaatgtttattaaaagaaagacggatacaattttcaaatatatcatatcttaaccatgaaaggtccacttcctattcatcccacaacaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4199231 |
acaatttatgaatgtttattaaaagaaagacggatacaattttcaaatatatcatatcttaaccatgaaaggtccacttcctattcatctcacaacaaac |
4199330 |
T |
|
| Q |
201 |
taatactcttatattaagtgtatgtttggaatacttgtttatctcaatat---tatttgttataccactgcttctt |
273 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| |
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| T |
4199331 |
aaatactcttatattaagtgtatgtttggaatacttatttatctcaatattagtatttgttataccactacttctt |
4199406 |
T |
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