View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20649_low_7 (Length: 243)
Name: NF20649_low_7
Description: NF20649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20649_low_7 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 26645071 - 26644845
Alignment:
| Q |
17 |
agatggagttttgatcatacgcatagaataaaccagccgtggcatcactacacaatccaataataccctttgctgctgaatcagaagtttggtcaaactg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26645071 |
agatggagttttgatcatacgcatagaataaaccagccgtggcatcactacacaatccaataataccctttgctgctgaatcagaagtttggtcaaattg |
26644972 |
T |
|
| Q |
117 |
aagttcttcaatgatgttctcactaattctatttacgacctatgttcaaacaatttaggaagcaaatgttaactcaaaaagatattgtgcacagcaccat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26644971 |
aagttcttcaatgatgttctcactaattctatttacgacctatgttcaaacaatttaggaagcaaatgttaactcaaaaagatattgtgcacagcaccat |
26644872 |
T |
|
| Q |
217 |
gatgcaaacaaaacagtgatatataag |
243 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
26644871 |
gatgcaaacaaaacagtgatagataag |
26644845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 10713896 - 10714122
Alignment:
| Q |
17 |
agatggagttttgatcatacgcatagaataaaccagccgtggcatcactacacaatccaataataccctttgctgctgaatcagaagtttggtcaaactg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10713896 |
agatggagttttgatcatacgcatagaataaaccagccgtggcatcactacacaatccaataataccctttgctgctgaatcagaagttttgtcaaactg |
10713995 |
T |
|
| Q |
117 |
aagttcttcaatgatgttctcactaattctatttacgacctatgttcaaacaatttaggaagcaaatgttaactcaaaaagatattgtgcacagcaccat |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10713996 |
aagttcttcaatgatgttctcgctaattctatttacgacctatgttcaaacaatttaggaagcaaatgttaactcaaaaagatattgtgcacagcaccat |
10714095 |
T |
|
| Q |
217 |
gatgcaaacaaaacagtgatatataag |
243 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
10714096 |
gatgcaaacaaaacagtgatagataag |
10714122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University