View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2064_high_1 (Length: 865)
Name: NF2064_high_1
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 274 - 858
Target Start/End: Original strand, 2432018 - 2432602
Alignment:
| Q |
274 |
tgaactgaattatggcacacaaggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaagaacatgacctcaatgcagcttt |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2432018 |
tgaactgaattatggcacacaaggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaagaacctgacctcaatgcagcttt |
2432117 |
T |
|
| Q |
374 |
aaaaaggtctgttattaacaattttatgccagattttgaatcaaattttttattgacacaaattgtagttacctatgtaacatcgacgcgtaatattgaa |
473 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2432118 |
aaaaaggtctgttattaacaattttatggcagaattttaatcaaattttttattgacgcaaattgtagttacctatgtaacatcgacgcgttatattgaa |
2432217 |
T |
|
| Q |
474 |
ggtgtgtcctacacatgctgtagcatcgacatgttatatcgacaagttatattgaaggtgtgtcctacaccagcacaacacagtcacttacaaatacata |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2432218 |
ggtgtgtcctacacatgctgtagcatcgacatgttatatcgacacattatattgaaggtgtgtcctacaccagcacaacacagtcacttacaaatacata |
2432317 |
T |
|
| Q |
574 |
cagtcactactcacttctatttttccaaattattgccatgtctatgcatcagtgttagtatcaatctgtgtcggtgcttcatagttactacttactacgc |
673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2432318 |
cagtcactactcacttctatttttccaaattattgccatgtctatgcatcagtgttagtatcaatctgtgtcggtgcttcatagttactacttactacgc |
2432417 |
T |
|
| Q |
674 |
ttagaaacatgagacacactaatgagtagttgatattgatatcaatgtatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttg |
773 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2432418 |
ttagaaacatgagacacactaatgagtagttgatattgatatcaatgtatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttg |
2432517 |
T |
|
| Q |
774 |
ggggaaagacacttgacgctgtactcttgaatatgaaactccatggccgcatacctgtaagtggaatgatctcacagtataatct |
858 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2432518 |
ggggaaagacacttgacgctgtactcttgaatatgaaactccatggccgcatacctgtaagtggaatgatctcacagtataatct |
2432602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 2431415 - 2431654
Alignment:
| Q |
18 |
aatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaatgtacaaaattga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2431415 |
aatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaatgtacaaaattga |
2431514 |
T |
|
| Q |
118 |
gcacaatgatgtcccactttcctattacatcgggattcttggtatatgcgttcaacaattttaatttatattgatattagtcgcgtagttttcttccatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2431515 |
gcacaatgatgtcccactttcctattacatcgggattcttggtatatgcgttcaacaatttcaatttatattgatattaatcgcgtagttttcttccatt |
2431614 |
T |
|
| Q |
218 |
ttgttgtgtatttttgacatatttcatgcttttgtttgag |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2431615 |
ttgttgtgtatttttgacatatttcatgcttttgtttgag |
2431654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 2434800 - 2435044
Alignment:
| Q |
18 |
aatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaatgtacaaaattga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
2434800 |
aatctggacatccagattataagaaagatgattcagtttggagtcttactaaatgggaagagtatagtttggttcctacaactggaattttcaaaattga |
2434899 |
T |
|
| Q |
118 |
gcacaatgatgtcccactttcctattacatcgggattcttggtata-----tgcgttcaacaattttaatttatattgatattagtcgcgtagttttctt |
212 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||||||||| | | ||||||||||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
2434900 |
gcacaatgatgtcccactttcctattataccggaattcttggtacacgcgttccgttcaacaatttcaatttatattgatattagtcgcgcaattttctt |
2434999 |
T |
|
| Q |
213 |
ccattttgttgtgtatttttgacata-tttcatgcttttgtttgag |
257 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| | ||||||||||||| |
|
|
| T |
2435000 |
ccattttgttgtgt-tttttgacatatttttacgcttttgtttgag |
2435044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 711 - 858
Target Start/End: Complemental strand, 2516539 - 2516392
Alignment:
| Q |
711 |
gatatcaatgtatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatgaa |
810 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2516539 |
gatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactcttgaatatgaa |
2516440 |
T |
|
| Q |
811 |
actccatggccgcatacctgtaagtggaatgatctcacagtataatct |
858 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2516439 |
actccatggccgcatacctgtgtgtggaatgatctcacagtataatct |
2516392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 711 - 858
Target Start/End: Original strand, 2429473 - 2429620
Alignment:
| Q |
711 |
gatatcaatgtatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatgaa |
810 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2429473 |
gatatcaatttatgtaaactagatactttccagaaggcattgacatttactttgagaatgtggggggaaagacacttgatgctgtactcttgaatatgaa |
2429572 |
T |
|
| Q |
811 |
actccatggccgcatacctgtaagtggaatgatctcacagtataatct |
858 |
Q |
| |
|
||||||||| || |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
2429573 |
actccatgggcggatacctgtgtgtggaatgatctcacagtacaatct |
2429620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 711 - 858
Target Start/End: Original strand, 2435816 - 2435963
Alignment:
| Q |
711 |
gatatcaatgtatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatgaa |
810 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||| |||||||||| |
|
|
| T |
2435816 |
gatatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatgag |
2435915 |
T |
|
| Q |
811 |
actccatggccgcatacctgtaagtggaatgatctcacagtataatct |
858 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2435916 |
agtccatggccgcatacctgtaagtggaatgatctcacagtacaatct |
2435963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 286 - 431
Target Start/End: Original strand, 2435465 - 2435609
Alignment:
| Q |
286 |
tggcacacaaggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaagaacatgacctcaatgcagctttaaaaaggtctgt |
385 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
2435465 |
tggcacactaggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcaactttaaaaaggtctgt |
2435564 |
T |
|
| Q |
386 |
tattaacaattttatgccagattttgaatcaaattttttattgaca |
431 |
Q |
| |
|
| |||||| ||||||| |||||||| |||||| || |||||||||| |
|
|
| T |
2435565 |
ttttaacatttttatggcagatttt-aatcaatttgtttattgaca |
2435609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 2428436 - 2428637
Alignment:
| Q |
18 |
aatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaa---tgtacaaaat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || | | |||||| |
|
|
| T |
2428436 |
aatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctgcagctcaaatacttttcaaaat |
2428535 |
T |
|
| Q |
115 |
tgagcacaatgatgtcccactttcctattacatcgggattcttggtatatgcgttcaacaattttaatttatattgatattagtcgcgtagttttcttcc |
214 |
Q |
| |
|
|||||| | ||||||||||||||||| || | || ||||| || |||| ||||||||||| ||||| ||| || |||||||||||||||||| || |
|
|
| T |
2428536 |
tgagcatacagatgtcccactttcctactatactggaattctcgg--tatgtattcaacaatttcaatttgtatcaatgttagtcgcgtagttttctgcc |
2428633 |
T |
|
| Q |
215 |
attt |
218 |
Q |
| |
|
|||| |
|
|
| T |
2428634 |
attt |
2428637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 289 - 431
Target Start/End: Original strand, 1459408 - 1459551
Alignment:
| Q |
289 |
cacacaaggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaagaacatgacctcaatgcagctttaaaaaggtctgttat |
388 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| | |
|
|
| T |
1459408 |
cacaccaggtggatttgttgaaaaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcagctttgaaaaggtctgtttt |
1459507 |
T |
|
| Q |
389 |
taacaattttatgccagattttgaatcaaattt-tttattgaca |
431 |
Q |
| |
|
||||| ||||||| ||||||| ||| ||||| |||||||||| |
|
|
| T |
1459508 |
taacatttttatggtagatttttaatttaatttgtttattgaca |
1459551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 289 - 431
Target Start/End: Original strand, 2429115 - 2429258
Alignment:
| Q |
289 |
cacacaaggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaagaacatgacctcaatgcagctttaaaaaggtctgttat |
388 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| | |
|
|
| T |
2429115 |
cacaccaggtggatttgttgaaaaataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcagctttgaaaaggtctgtttt |
2429214 |
T |
|
| Q |
389 |
taacaattttatgccagattttgaatcaaattt-tttattgaca |
431 |
Q |
| |
|
||||| ||||||| ||||||| ||| ||||| |||||||||| |
|
|
| T |
2429215 |
taacatttttatggtagatttttaatttaatttgtttattgaca |
2429258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 1458729 - 1458930
Alignment:
| Q |
18 |
aatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaa---tgtacaaaat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| || || || | | |||||| |
|
|
| T |
1458729 |
aatctggacatccagattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctcaaatacttttcaaaat |
1458828 |
T |
|
| Q |
115 |
tgagcacaatgatgtcccactttcctattacatcgggattcttggtatatgcgttcaacaattttaatttatattgatattagtcgcgtagttttcttcc |
214 |
Q |
| |
|
|||||| | ||||||||||||||||| || | || ||||| || |||| ||||||||||| ||||| ||| || |||||||||||||||||| || |
|
|
| T |
1458829 |
tgagcatacagatgtcccactttcctactatactggaattctcgg--tatgtattcaacaatttcaatttgtatcaatgttagtcgcgtagttttctgcc |
1458926 |
T |
|
| Q |
215 |
attt |
218 |
Q |
| |
|
|||| |
|
|
| T |
1458927 |
attt |
1458930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 726 - 858
Target Start/End: Complemental strand, 2496951 - 2496819
Alignment:
| Q |
726 |
aaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatgaaactccatggccgcat |
825 |
Q |
| |
|
|||| ||| |||| || ||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||| |||| | |||| |||||||| |
|
|
| T |
2496951 |
aaatcaggcacttccctgaaggcattgatatttactttgagaatgttggaggcaagacacttgatgctgtactcttgaacatgagagtccacggccgcat |
2496852 |
T |
|
| Q |
826 |
acctgtaagtggaatgatctcacagtataatct |
858 |
Q |
| |
|
||||| | ||||||||||||||||||| ||||| |
|
|
| T |
2496851 |
acctgcatgtggaatgatctcacagtacaatct |
2496819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 726 - 858
Target Start/End: Complemental strand, 2512253 - 2512121
Alignment:
| Q |
726 |
aaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatgaaactccatggccgcat |
825 |
Q |
| |
|
|||| ||| ||||||||||||| |||||| ||||||||||||| ||||| || ||||||||||| || ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
2512253 |
aaatcaggcactttccagaaggaattgacgtttactttgagaacgttggaggcaagacacttgatgccgtactcttgaacatgaaactacatggtcgcat |
2512154 |
T |
|
| Q |
826 |
acctgtaagtggaatgatctcacagtataatct |
858 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |
|
|
| T |
2512153 |
acctgtgtgtggaatgatctcacagtacaatct |
2512121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 721 - 858
Target Start/End: Complemental strand, 2505637 - 2505500
Alignment:
| Q |
721 |
tatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatgaaactccatggc |
820 |
Q |
| |
|
||||| ||| ||| ||||||||||||||||||| ||||||||||||| || || || ||||||||||| || ||||||||||| |||| | | || || |
|
|
| T |
2505637 |
tatgtgaatcaggcactttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacatgagattacaaggt |
2505538 |
T |
|
| Q |
821 |
cgcatacctgtaagtggaatgatctcacagtataatct |
858 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
2505537 |
cgcatacctgtgtgtggaatgatctcacagtacaatct |
2505500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 295 - 382
Target Start/End: Complemental strand, 2516732 - 2516645
Alignment:
| Q |
295 |
aggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaagaacatgacctcaatgcagctttaaaaaggtc |
382 |
Q |
| |
|
|||||||| | || || |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2516732 |
aggtggatatgttaaaaaataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc |
2516645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 295 - 382
Target Start/End: Complemental strand, 2505798 - 2505711
Alignment:
| Q |
295 |
aggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaagaacatgacctcaatgcagctttaaaaaggtc |
382 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| || |||||||||||| | || |||||||| |
|
|
| T |
2505798 |
aggtggatctgttgaagaataaatttggatacgatgaagccattaactacaaagaagagcaagacctcaatgcaacattgaaaaggtc |
2505711 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 295 - 382
Target Start/End: Complemental strand, 2512456 - 2512369
Alignment:
| Q |
295 |
aggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaagaacatgacctcaatgcagctttaaaaaggtc |
382 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| ||||||| || |||||||| |
|
|
| T |
2512456 |
aggtggatctgttgaagaataaatttggatacgatgaagccattaactacaaagaagaacaagacctggatgcagcattgaaaaggtc |
2512369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 295 - 381
Target Start/End: Complemental strand, 2497179 - 2497093
Alignment:
| Q |
295 |
aggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaagaacatgacctcaatgcagctttaaaaaggt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || || |||||||| ||||| | ||||||| |||||||||| ||||||| |
|
|
| T |
2497179 |
aggtggatcttttgaagaataaatttggatttgatggaggtttcaactacaaggaagagcctgacctcgatgcagctttgaaaaggt |
2497093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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