View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_high_12 (Length: 400)
Name: NF2064_high_12
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Complemental strand, 34566247 - 34565878
Alignment:
| Q |
13 |
agcagagaacataagctcttccttatgctttgtggattgtatccagaagactttgacattcctattgaaagtttattgtgtcatggttttggcttgggtc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34566247 |
agcagagaacataagctcttccttatgctttgtggattgtatccagaagactttgacattcccattgaaagtttattgtgtcatggttttggcttgggtc |
34566148 |
T |
|
| Q |
113 |
cgttcaaagacatcagtgcatcatgggaagccagaaatcgagtgcatacattggtggaagatctaaggagaaagtttttattgttggacagcagtgtgcc |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34566147 |
cgttcaaagacatcagtgcatcatgggaagcaagaaatcgagtgcatacattggtggaagatctaaggagaaagtttttattgttggatagcagtgtgcc |
34566048 |
T |
|
| Q |
213 |
agggtgtgtgaagatgcatgatatggtgtgtaatgttgttatatcagtagcatttaaaaatgcagaagataaattcatggtaaagtacacctttaagagt |
312 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34566047 |
agggtgtgtgaagatgcatgatattgtgcgtaatgttgttatatcagtagcatttaaaaatgcagaagataaattcatggtaaagtacacctttaagagt |
34565948 |
T |
|
| Q |
313 |
ctaaaagaagagcaattgaacgagatcaatgcaatatcacttattttggacgatactaaagagttagaaa |
382 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34565947 |
ctaaaagaagagaaattgaacgagatcaatgcaatatcacttattttggatgatactaaagagttagaaa |
34565878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 34291747 - 34291390
Alignment:
| Q |
18 |
agaacataagctcttccttatgctttgtggattgtatccagaagactttgacattcctattgaaagtttattgtgtcatggttttggcttgggtccgttc |
117 |
Q |
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| T |
34291747 |
agaacataagctcttgcttatgctttgtggattatttccagaagactttgacattcctattgaaagtttattgtatcatgcttttggcttgggattgttc |
34291648 |
T |
|
| Q |
118 |
aaagacatcagtgcatcatgggaagccagaaatcgagtgcatacattggtggaagatctaaggagaaagtttttattgttggacagcagtgtgccagggt |
217 |
Q |
| |
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||| |||| | |||||||| | |||| ||||| ||||||||||||||||||||||||||||| ||||||| || ||||||||||||| ||||| |
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| T |
34291647 |
aaatacattaatgcatcattgaaagcaagaaaccgagtgcatacattggtggaagatctaagacgaaagttcttgttgttggacagcaatgtgc------ |
34291554 |
T |
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| Q |
218 |
gtgtgaagatgcatgatatggtgtgtaatgttgttatatcagtagcatttaaaaatgcagaagataaattcatggtaaagtacacctttaagagtctaaa |
317 |
Q |
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|||||||||||| ||||| ||| | |||||||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |
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| T |
34291553 |
-tgtgaagatgcacgatattgtgcgcaatgttgttatatctatagcatttaaaaatgcagaagataaatttatggtacaatacacctttaagagtctaaa |
34291455 |
T |
|
| Q |
318 |
agaagagcaattgaacgagatcaatgcaatatcacttattttggacgatactaaagagttagaaa |
382 |
Q |
| |
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|||||| |||||| ||||||||| |||||||||||||||||||| ||||| |||| |||||||| |
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| T |
34291454 |
agaagataaattgagcgagatcaacgcaatatcacttattttggatgatacaaaagtgttagaaa |
34291390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 31 - 271
Target Start/End: Complemental strand, 34554555 - 34554315
Alignment:
| Q |
31 |
ttccttatgctttgtggattgtatccagaagactttgacattcctattgaaagtttattgtgtcatggttttggcttgggtccgttcaaagacatcagtg |
130 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||| | | |||||||| |||||||| ||| ||| |
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| T |
34554555 |
ttccttatgctttgtggattgtttccggaagactttgacatacctattgaaagtttattatgtcacgcaatgggcttgggattgttcaaagctatcggtg |
34554456 |
T |
|
| Q |
131 |
catcatgggaagccagaaatcgagtgcatacattggtggaagatctaaggagaaagtttttattgttggacagcagtgtgccagggtgtgtgaagatgca |
230 |
Q |
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||||| |||| ||||| |||||| ||| || ||||| ||||||| |||| || || |||||||| |||| ||| ||||||||||||||||| || |
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| T |
34554455 |
agccatggaaagcaagaaaccgagtgaatagttttgtggacgatctaaagagatgcttcttgttgttggatagcaatgtcccagggtgtgtgaagataca |
34554356 |
T |
|
| Q |
231 |
tgatatggtgtgtaatgttgttatatcagtagcatttaaaa |
271 |
Q |
| |
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|||||| || || ||||||| |||| ||| |||||||||| |
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| T |
34554355 |
tgatattgtacgtgatgttgtcatattagttgcatttaaaa |
34554315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 34371977 - 34372020
Alignment:
| Q |
40 |
ctttgtggattgtatccagaagactttgacattcctattgaaag |
83 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||| ||||| |
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| T |
34371977 |
ctttgtggattgtttccagaggactttgacattcctatagaaag |
34372020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 25 - 362
Target Start/End: Complemental strand, 15895925 - 15895588
Alignment:
| Q |
25 |
aagctcttccttatgctttgtggattgtatccagaagactttgacattcctattgaaagtttattgtgtcatggttttggcttgggtccgttcaaagaca |
124 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||| ||| ||||| | || ||||| ||||||| ||| |
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| T |
15895925 |
aagctattccttatgctttgtggattgtttcctgaagactttgatattcctattgaatgtttgttgcatcatgcagtgggtttgggaatgttcaaacaca |
15895826 |
T |
|
| Q |
125 |
tcagtgcatcatgggaagccagaaatcgagtgcatacattggtggaagatctaaggagaaagtttttattgttggacagcagtgtgccagggtgtgtgaa |
224 |
Q |
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| | ||||||||||||||| ||| | | ||||||||||||||| || |||||| |||||||||||| ||| |||| || | ||||| ||| ||||| || |
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| T |
15895825 |
ttactgcatcatgggaagcaagagaccaagtgcatacattggtagataatctaaagagaaagtttttgttgctggaaagtaatgtgcgaggatgtgtaaa |
15895726 |
T |
|
| Q |
225 |
gatgcatgatatggtgtgtaatgttgttatatcagtagcatttaaaaatgcagaagataaattcatggtaaagtacacctttaagagtctaaaagaagag |
324 |
Q |
| |
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|||||||||||| ||| | ||||||||||||||| | |||||||| || |||| ||||||| ||||| | |||| |||||||||| ||||||||||| |
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| T |
15895725 |
gatgcatgatattgtgcgaaatgttgttatatcatttttatttaaaagtgaagaacataaatttatggtgcaatacaactttaagagtttaaaagaagag |
15895626 |
T |
|
| Q |
325 |
caattgaacgagatcaatgcaatatcacttattttgga |
362 |
Q |
| |
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||||||| || ||||| |||||||||||||| ||||| |
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| T |
15895625 |
aaattgaatgacatcaaagcaatatcacttatcttgga |
15895588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 382
Target Start/End: Original strand, 130242 - 130589
Alignment:
| Q |
32 |
tccttatgctttgtggattgtatccagaagactttgacattcctattgaaagtttattgtgtcatggttttggcttgggtccgttcaaagacatcagtgc |
131 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||||| |||||| | |||||||| |||||||| | | ||| |
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| T |
130242 |
tccttatgctttgtggattatttccagaagactttgatattcctattgaaattttattgcgtcatgcaataggcttgggattgttcaaagccgttggtga |
130341 |
T |
|
| Q |
132 |
atcatgggaagccagaaatcgagtgcatacattggtggaagatctaaggagaaagtttttattgttggacagcagtgtgccagggtgtgtgaagatgcat |
231 |
Q |
| |
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||| | |||| ||||||||||||| || ||||||| ||||||| |||| || || ||||||||||||| ||| |||||||||||||||||||| |
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| T |
130342 |
gccattgaaagcaagaaatcgagtgcgtagtttggtgggcgatctaaagagatgtttcttgttgttggacagcaatgttccagggtgtgtgaagatgcac |
130441 |
T |
|
| Q |
232 |
gatatggtgtgtaatgttgttatatcagtagcatttaaaaatgcagaagataaattcatggtaaagtacacctttaagagtctaaaagaagagcaattga |
331 |
Q |
| |
|
|| || || || ||||||| || | ||| ||||||||| | ||| | || || ||||| || || | | ||||| || |||||||| |||||| |
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| T |
130442 |
gacattgtacgtgatgttgtcatcttagtttcatttaaaa---ctgaacacaagtttatggtgaaatatgacatgaagaggctgaaagaagaaaaattga |
130538 |
T |
|
| Q |
332 |
acgagatcaatgcaatatcacttattttggacgatactaaagagttagaaa |
382 |
Q |
| |
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| || |||||||||||||||||||| ||||| | |||| ||||||||||| |
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|
| T |
130539 |
atgacatcaatgcaatatcacttatcttggatcacactatagagttagaaa |
130589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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