View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2064_high_14 (Length: 358)

Name: NF2064_high_14
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2064_high_14
NF2064_high_14
[»] chr1 (18 HSPs)
chr1 (1-343)||(42440165-42440517)
chr1 (1-49)||(30678830-30678881)
chr1 (5-48)||(21400044-21400090)
chr1 (1-48)||(36371057-36371107)
chr1 (6-48)||(17139539-17139584)
chr1 (1-50)||(6219879-6219931)
chr1 (5-50)||(7925356-7925404)
chr1 (5-49)||(13054866-13054913)
chr1 (5-49)||(33020064-33020111)
chr1 (1-30)||(33153897-33153926)
chr1 (2-50)||(41573287-41573338)
chr1 (5-49)||(42045393-42045440)
chr1 (1-48)||(15602194-15602244)
chr1 (5-48)||(27533237-27533283)
chr1 (5-48)||(37098502-37098548)
chr1 (5-52)||(41973245-41973295)
chr1 (1-48)||(44243867-44243917)
chr1 (5-52)||(45140027-45140077)
[»] chr5 (17 HSPs)
chr5 (2-50)||(4622361-4622410)
chr5 (5-49)||(6489000-6489047)
chr5 (5-49)||(34436844-34436891)
chr5 (5-48)||(5485180-5485226)
chr5 (5-48)||(15889405-15889451)
chr5 (6-50)||(30843424-30843470)
chr5 (1-50)||(1512847-1512899)
chr5 (1-50)||(10199011-10199063)
chr5 (5-50)||(22522822-22522870)
chr5 (1-50)||(32565516-32565568)
chr5 (5-50)||(37932322-37932370)
chr5 (5-49)||(27721696-27721743)
chr5 (5-48)||(17210730-17210776)
chr5 (5-48)||(19759923-19759969)
chr5 (6-49)||(20370152-20370198)
chr5 (5-48)||(24485693-24485739)
chr5 (5-48)||(36321515-36321561)
[»] chr8 (8 HSPs)
chr8 (5-49)||(39821877-39821924)
chr8 (5-48)||(11708980-11709026)
chr8 (1-30)||(31511986-31512015)
chr8 (6-50)||(33445562-33445609)
chr8 (2-30)||(28271963-28271991)
chr8 (1-48)||(35682709-35682759)
chr8 (5-48)||(37015857-37015903)
chr8 (1-48)||(44293569-44293619)
[»] chr4 (19 HSPs)
chr4 (5-49)||(50362160-50362207)
chr4 (1-48)||(2932117-2932167)
chr4 (5-48)||(13121538-13121584)
chr4 (5-48)||(20799415-20799461)
chr4 (5-49)||(21114326-21114370)
chr4 (1-52)||(36478981-36479035)
chr4 (5-50)||(7230272-7230320)
chr4 (5-50)||(8494979-8495027)
chr4 (1-50)||(9028089-9028141)
chr4 (5-50)||(13276121-13276169)
chr4 (5-49)||(2186354-2186401)
chr4 (5-49)||(7061548-7061593)
chr4 (1-30)||(14197448-14197477)
chr4 (1-49)||(22164286-22164337)
chr4 (1-30)||(23160055-23160084)
chr4 (5-49)||(23304037-23304084)
chr4 (5-49)||(52270051-52270098)
chr4 (1-45)||(54500566-54500613)
chr4 (5-48)||(12322667-12322713)
[»] chr3 (10 HSPs)
chr3 (1-49)||(28918907-28918958)
chr3 (1-48)||(7464508-7464558)
chr3 (5-48)||(18870746-18870792)
chr3 (1-50)||(55494681-55494733)
chr3 (5-49)||(1149090-1149137)
chr3 (5-49)||(10498716-10498763)
chr3 (5-49)||(16980375-16980422)
chr3 (2-30)||(12408193-12408221)
chr3 (5-48)||(48511249-48511290)
chr3 (1-52)||(53633634-53633688)
[»] chr6 (6 HSPs)
chr6 (1-48)||(16390423-16390473)
chr6 (5-51)||(5655328-5655377)
chr6 (5-45)||(10780128-10780171)
chr6 (7-51)||(29740473-29740520)
chr6 (5-49)||(32053781-32053828)
chr6 (5-48)||(7083013-7083059)
[»] chr2 (20 HSPs)
chr2 (1-52)||(41939125-41939179)
chr2 (1-51)||(14735910-14735963)
chr2 (5-50)||(3197100-3197148)
chr2 (5-50)||(7206117-7206165)
chr2 (5-50)||(11931597-11931645)
chr2 (5-50)||(45032685-45032733)
chr2 (5-49)||(20455884-20455931)
chr2 (5-45)||(20565096-20565139)
chr2 (5-49)||(27244650-27244697)
chr2 (2-46)||(34191326-34191373)
chr2 (7-50)||(6238587-6238633)
chr2 (5-48)||(9383230-9383276)
chr2 (5-48)||(9842223-9842269)
chr2 (5-48)||(10735852-10735898)
chr2 (5-48)||(11560492-11560538)
chr2 (1-48)||(15381627-15381677)
chr2 (5-48)||(24592867-24592913)
chr2 (1-48)||(28202291-28202341)
chr2 (5-48)||(29544621-29544667)
chr2 (9-48)||(35820326-35820368)
[»] scaffold1149 (1 HSPs)
scaffold1149 (5-50)||(2324-2372)
[»] chr7 (9 HSPs)
chr7 (6-51)||(48980478-48980526)
chr7 (1-49)||(7388056-7388107)
chr7 (1-30)||(40187653-40187682)
chr7 (1-48)||(5526719-5526769)
chr7 (5-52)||(5579683-5579733)
chr7 (5-48)||(10244721-10244767)
chr7 (2-30)||(21411534-21411562)
chr7 (6-49)||(36803831-36803877)
chr7 (5-48)||(39801700-39801746)
[»] scaffold0011 (1 HSPs)
scaffold0011 (5-52)||(185253-185303)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 42440165 - 42440517
Alignment:
Q  1 cttacatatattatgcattgtccctaccaaagctaagctcacgaggacaatcgcaacaatatataaacgaagtttaccctttttataagggctgtgttag 100  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  42440165 cttacatatattatgcattgcccctaccaaagttaagctcacgaggacaatcgcagcaatatataaacgaagtttacccttttcataagggccgtgttag 42440264  T
Q  101 acaaatccaatccaaatccaaat----------tcaataacgttgatgccacaataaccttagaagcccccaaaggtccaaacacagaataaaactaaga 190  Q
    |||||||||||||||||||||||          ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42440265 acaaatccaatccaaatccaaattcacttaaattcaataacgttgatgccgcaataaccctagaagcccccaaaggtccaaacacagaataaaactaaga 42440364  T
Q  191 tgtttcatgtttcgtcttgtcacagcatgtacacaaaaaatttcctgaattaatctatggtaaaccattgttacgtacgtgtatagctttgagaggagta 290  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42440365 tgtttcatgtttcgtcttgtcacaacatgtacacaaaaaatttcctgaattaatctatggtaaaccattgttacgtacgtgtatagctttgagaggagta 42440464  T
Q  291 acctttcgttttcgtctgcagtacaaaaactccaaaacaacagtgcgaatgtt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42440465 acctttcgttttcgtctgcagtacaaaaactccaaaacaacagtacgaatgtt 42440517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30678830 - 30678881
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||||||||||||||   || ||||||||||||||||    
T  30678830 cttacatatattatgcattgtccctaccaactgagttaagctcacgaggaca 30678881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 21400044 - 21400090
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  21400044 catatattatgcattgtccctaccaactgagctaagctcacgaggac 21400090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36371057 - 36371107
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    |||||||||||||||||||||| |||||||   ||||||||||||||||||    
T  36371057 cttacatatattatgcattgtctctaccaactgagctaagctcacgaggac 36371107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 17139539 - 17139584
Alignment:
Q  6 atatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    |||||||||||||||||||||||||   ||||||||||||||||||    
T  17139539 atatattatgcattgtccctaccaactgagctaagctcacgaggac 17139584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6219879 - 6219931
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    ||||||||||||||| ||||||||||||||   || |||||||||||||||||    
T  6219879 cttacatatattatgtattgtccctaccaaccgagttaagctcacgaggacaa 6219931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 7925404 - 7925356
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    |||||||||||||||||| |||||||   ||||||||||||||||||||    
T  7925404 catatattatgcattgtctctaccaactgagctaagctcacgaggacaa 7925356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 13054913 - 13054866
Alignment:
Q  5 catatattatgcattgtccctacca---aagctaagctcacgaggaca 49  Q
    |||||||||||||||||||||||||   ||||||||||||| ||||||    
T  13054913 catatattatgcattgtccctaccaactaagctaagctcacaaggaca 13054866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 33020064 - 33020111
Alignment:
Q  5 catatattatgcattgtccctacca---aagctaagctcacgaggaca 49  Q
    |||||||||||||||||||||||||    |||||||||||||||||||    
T  33020064 catatattatgcattgtccctaccagttgagctaagctcacgaggaca 33020111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 33153897 - 33153926
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa 30  Q
    ||||||||||||||||||||||||||||||    
T  33153897 cttacatatattatgcattgtccctaccaa 33153926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 41573287 - 41573338
Alignment:
Q  2 ttacatatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    |||||||||||||||||||||||||||||   || ||| |||||||||||||    
T  41573287 ttacatatattatgcattgtccctaccaactgagttaaactcacgaggacaa 41573338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 42045393 - 42045440
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||| ||||||   |||||||||||||||||||    
T  42045393 catatattatgcattgtccataccaactgagctaagctcacgaggaca 42045440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15602194 - 15602244
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||| ||||||   ||||| ||||||||||||    
T  15602194 cttacatatattatgcattgtccataccaactgagctatgctcacgaggac 15602244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 27533283 - 27533237
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||   | ||||||||||||||||    
T  27533283 catatattatgcattgtccctaccaactgatctaagctcacgaggac 27533237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 37098502 - 37098548
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    |||||||||| |||||||||||||||   ||||||||||||||||||    
T  37098502 catatattattcattgtccctaccaactgagctaagctcacgaggac 37098548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 41973295 - 41973245
Alignment:
Q  5 catatattatgcattgtccctacca---aagctaagctcacgaggacaatc 52  Q
    |||||||||||||||||||||||||   ||| ||||||| |||||||||||    
T  41973295 catatattatgcattgtccctaccaattaagttaagctcgcgaggacaatc 41973245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44243917 - 44243867
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||| ||||||||   |||||| |||||||||||    
T  44243917 cttacatatattatgcattgttcctaccaactgagctaaactcacgaggac 44243867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 45140027 - 45140077
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaatc 52  Q
    ||||||||||||||||||| ||||||   ||||||||||||| ||||||||    
T  45140027 catatattatgcattgtccataccaactgagctaagctcacggggacaatc 45140077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 4622361 - 4622410
Alignment:
Q  2 ttacatatattatgcattgtccctaccaa-agctaagctcacgaggacaa 50  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  4622361 ttacatatattatgcattgtccttaccaagagctaagctcacgaggacaa 4622410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 6489047 - 6489000
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||    
T  6489047 catatattatgcattgtccctaccaactgagctaagctcacgaggaca 6489000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 34436891 - 34436844
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||    
T  34436891 catatattatgcattgtccctaccaactgagctaagctcacgaggaca 34436844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 5485226 - 5485180
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  5485226 catatattatgcattgtccctaccaactgagctaagctcacgaggac 5485180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 15889451 - 15889405
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  15889451 catatattatgcattgtccctaccaactgagctaagctcacgaggac 15889405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 30843424 - 30843470
Alignment:
Q  6 atatattatgcattgtccctaccaa--agctaagctcacgaggacaa 50  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||    
T  30843424 atatattatgcattgtccataccaatgagctaagctcacgaggacaa 30843470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 1512899 - 1512847
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    ||||||||||||||||||||||||||| ||   || |||||||||||||||||    
T  1512899 cttacatatattatgcattgtccctactaactgagttaagctcacgaggacaa 1512847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10199063 - 10199011
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    |||| |||||||||||||||||| ||||||   ||||||||||||||||||||    
T  10199063 cttatatatattatgcattgtccataccaactgagctaagctcacgaggacaa 10199011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 22522822 - 22522870
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    ||||||||||||||||||| ||||||   ||||||||||||||||||||    
T  22522822 catatattatgcattgtccataccaaccgagctaagctcacgaggacaa 22522870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32565568 - 32565516
Alignment:
Q  1 cttacatatattatgcattgtccctacca---aagctaagctcacgaggacaa 50  Q
    ||||||||||||||||||| |||||||||    ||||||||||||||||||||    
T  32565568 cttacatatattatgcattatccctaccagctgagctaagctcacgaggacaa 32565516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 37932370 - 37932322
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    ||||||||||||||||||| ||||||   ||||||||||||||||||||    
T  37932370 catatattatgcattgtccataccaactgagctaagctcacgaggacaa 37932322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 27721696 - 27721743
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||| ||||||||   |||||||||||||||||||    
T  27721696 catatattatgcattgttcctaccaactgagctaagctcacgaggaca 27721743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 17210730 - 17210776
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||| ||||||||||||   ||||||||||||||||||    
T  17210730 catatattatgcactgtccctaccaactgagctaagctcacgaggac 17210776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 19759969 - 19759923
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||| ||||||||   ||||||||||||||||||    
T  19759969 catatattatgcattgtacctaccaattgagctaagctcacgaggac 19759923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 20370152 - 20370198
Alignment:
Q  6 atatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    |||||||||||||| ||||||||||   |||||||||||||||||||    
T  20370152 atatattatgcattatccctaccaactgagctaagctcacgaggaca 20370198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 24485739 - 24485693
Alignment:
Q  5 catatattatgcattgtccctacca---aagctaagctcacgaggac 48  Q
    ||||||||||||||||||| |||||   |||||||||||||||||||    
T  24485739 catatattatgcattgtccataccaactaagctaagctcacgaggac 24485693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 36321515 - 36321561
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||| ||||||   ||||||||||||||||||    
T  36321515 catatattatgcattgtccttaccaactgagctaagctcacgaggac 36321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 39821924 - 39821877
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||    
T  39821924 catatattatgcattgtccctaccaactgagctaagctcacgaggaca 39821877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 11709026 - 11708980
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  11709026 catatattatgcattgtccctaccaactgagctaagctcacgaggac 11708980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 31512015 - 31511986
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa 30  Q
    ||||||||||||||||||||||||||||||    
T  31512015 cttacatatattatgcattgtccctaccaa 31511986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 33445609 - 33445562
Alignment:
Q  6 atatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    |||||||||||||||| ||||||||   ||||||||||||||||||||    
T  33445609 atatattatgcattgttcctaccaactgagctaagctcacgaggacaa 33445562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 28271991 - 28271963
Alignment:
Q  2 ttacatatattatgcattgtccctaccaa 30  Q
    |||||||||||||||||||||||||||||    
T  28271991 ttacatatattatgcattgtccctaccaa 28271963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35682709 - 35682759
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||| ||||||| ||||||   ||||||||||||||||||    
T  35682709 cttacatatattatggattgtccgtaccaactgagctaagctcacgaggac 35682759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 37015857 - 37015903
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    |||||||||||||||||| |||||||   ||||||||||||||||||    
T  37015857 catatattatgcattgtctctaccaactgagctaagctcacgaggac 37015903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44293619 - 44293569
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||  ||||||   ||||||||||||||||||    
T  44293619 cttacatatattatgcattgtctataccaactgagctaagctcacgaggac 44293569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 50362160 - 50362207
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||    
T  50362160 catatattatgcattgtccctaccaactgagctaagctcacgaggaca 50362207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 2932167 - 2932117
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    |||||||||||||||||||||||||| |||   ||||||||||||||||||    
T  2932167 cttacatatattatgcattgtccctatcaacagagctaagctcacgaggac 2932117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 13121584 - 13121538
Alignment:
Q  5 catatattatgcattgtccctacca---aagctaagctcacgaggac 48  Q
    |||||||||||||||||||||||||   |||||||||||||||||||    
T  13121584 catatattatgcattgtccctaccaactaagctaagctcacgaggac 13121538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 20799415 - 20799461
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  20799415 catatattatgcattgtccctaccaactgagctaagctcacgaggac 20799461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 21114326 - 21114370
Alignment:
Q  5 catatattatgcattgtccctaccaaagctaagctcacgaggaca 49  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||||    
T  21114326 catatatcatgcattgtccataccaacgctaagctcacgaggaca 21114370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36479035 - 36478981
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggacaatc 52  Q
    ||||||||||||||||||||||| ||||||   ||||||||||| ||||||||||    
T  36479035 cttacatatattatgcattgtccataccaacagagctaagctcatgaggacaatc 36478981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 7230320 - 7230272
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    ||||||||||||||||||| ||||||   ||||||||||||||||||||    
T  7230320 catatattatgcattgtccttaccaactgagctaagctcacgaggacaa 7230272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 8495027 - 8494979
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    ||||||||||||||||||||||||||   ||||||| ||||||||||||    
T  8495027 catatattatgcattgtccctaccaactgagctaagttcacgaggacaa 8494979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 9028089 - 9028141
Alignment:
Q  1 cttacatatattatgcattgtccctacca---aagctaagctcacgaggacaa 50  Q
    ||||||||| |||||||||||||||||||   |||||||||||| ||||||||    
T  9028089 cttacatattttatgcattgtccctaccaattaagctaagctcaggaggacaa 9028141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 13276169 - 13276121
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    ||||||||||||||||||||||||||   || |||||||||||||||||    
T  13276169 catatattatgcattgtccctaccaattgagttaagctcacgaggacaa 13276121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 2186354 - 2186401
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||| ||||||   |||||||||||||||||||    
T  2186354 catatattatgcattgtccataccaactgagctaagctcacgaggaca 2186401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 7061548 - 7061593
Alignment:
Q  5 catatattatgcattgtccctaccaa-agctaagctcacgaggaca 49  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||    
T  7061548 catatattatgcattgtcccttccaacagctaagctcacgaagaca 7061593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 14197448 - 14197477
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa 30  Q
    ||||||||||||||||||||||||||||||    
T  14197448 cttacatatattatgcattgtccctaccaa 14197477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22164286 - 22164337
Alignment:
Q  1 cttacatatattatgcattgtccctacca---aagctaagctcacgaggaca 49  Q
    ||||||||||||||||||||| |||||||   ||||||| ||||||||||||    
T  22164286 cttacatatattatgcattgttcctaccaactaagctaaactcacgaggaca 22164337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 23160084 - 23160055
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa 30  Q
    ||||||||||||||||||||||||||||||    
T  23160084 cttacatatattatgcattgtccctaccaa 23160055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 23304037 - 23304084
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    |||||||||||| |||||||||||||   |||||||||||||||||||    
T  23304037 catatattatgccttgtccctaccaactgagctaagctcacgaggaca 23304084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 52270051 - 52270098
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||| ||||||   |||||||||||||||||||    
T  52270051 catatattatgcattgtccataccaactgagctaagctcacgaggaca 52270098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 54500613 - 54500566
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgag 45  Q
    |||||||||||||||||||||| |||||||   |||||||||||||||    
T  54500613 cttacatatattatgcattgtctctaccaactgagctaagctcacgag 54500566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 12322713 - 12322667
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||| ||||||   ||||||||||||||||||    
T  12322713 catatattatgcattgtccgtaccaactgagctaagctcacgaggac 12322667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28918907 - 28918958
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||||| ||||||||   |||||||||||||||||||    
T  28918907 cttacatatattatgcattgtacctaccaaccgagctaagctcacgaggaca 28918958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7464508 - 7464558
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||||||   || |||||||||||||||    
T  7464508 cttacatatattatgcattgtccctaccaactgagttaagctcacgaggac 7464558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 18870746 - 18870792
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  18870746 catatattatgcattgtccctaccaactgagctaagctcacgaggac 18870792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 55494733 - 55494681
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    ||||||||||||||||||||||||||||||   ||||| ||||||| ||||||    
T  55494733 cttacatatattatgcattgtccctaccaattgagctatgctcacggggacaa 55494681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 1149090 - 1149137
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||| ||||||   |||||||||||||||||||    
T  1149090 catatattatgcattgtccttaccaactgagctaagctcacgaggaca 1149137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 10498716 - 10498763
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||| ||||||   |||||||||||||||||||    
T  10498716 catatattatgcattgtccataccaactgagctaagctcacgaggaca 10498763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 16980375 - 16980422
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||| ||||||   |||||||||||||||||||    
T  16980375 catatattatgcattgtccttaccaactgagctaagctcacgaggaca 16980422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 12408221 - 12408193
Alignment:
Q  2 ttacatatattatgcattgtccctaccaa 30  Q
    |||||||||||||||||||||||||||||    
T  12408221 ttacatatattatgcattgtccctaccaa 12408193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 48511290 - 48511249
Alignment:
Q  5 catatattatgcattgtccctaccaaagctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||  || |||||||||||||    
T  48511290 catatattatgcattgtccctaccaa--ctgagctcacgaggac 48511249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 53633634 - 53633688
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggacaatc 52  Q
    ||||||||||||||||||| ||| ||||||   || |||||||||||||||||||    
T  53633634 cttacatatattatgcattatccttaccaactgagttaagctcacgaggacaatc 53633688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16390473 - 16390423
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||||||   || |||||||||||||||    
T  16390473 cttacatatattatgcattgtccctaccaactgaggtaagctcacgaggac 16390423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 5655328 - 5655377
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaat 51  Q
    ||||||||||| ||||||||||||||   |||||||||||||||||||||    
T  5655328 catatattatgtattgtccctaccaactgagctaagctcacgaggacaat 5655377  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 10780128 - 10780171
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgag 45  Q
    ||||||||||||||||||||||||||   |||||||||||||||    
T  10780128 catatattatgcattgtccctaccaactgagctaagctcacgag 10780171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 29740520 - 29740473
Alignment:
Q  7 tatattatgcattgtccctaccaa---agctaagctcacgaggacaat 51  Q
    ||||||||||||||||| ||||||   |||||||||||||||||||||    
T  29740520 tatattatgcattgtccataccaattgagctaagctcacgaggacaat 29740473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 32053828 - 32053781
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||| ||||||   |||||||||||||||||||    
T  32053828 catatattatgcattgtccataccaactgagctaagctcacgaggaca 32053781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 7083013 - 7083059
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||| ||||||   ||||||||||||||||||    
T  7083013 catatattatgcattgtccttaccaattgagctaagctcacgaggac 7083059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41939125 - 41939179
Alignment:
Q  1 cttacatatattatgcattgtccctacca---aagctaagctcacgaggacaatc 52  Q
    ||||||||||||||||||| |||||||||   |||||||||||||||||| ||||    
T  41939125 cttacatatattatgcattatccctaccaactaagctaagctcacgaggataatc 41939179  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14735910 - 14735963
Alignment:
Q  1 cttacatatattatgcattgtccctacca---aagctaagctcacgaggacaat 51  Q
    ||||||||| ||||||||||||| |||||   ||||||||||||||||||||||    
T  14735910 cttacatattttatgcattgtccataccaattaagctaagctcacgaggacaat 14735963  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 3197100 - 3197148
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||    
T  3197100 catatattatgcattgtccctaccaactgagctaaactcacgaggacaa 3197148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 7206165 - 7206117
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    |||||||||||||||||| |||||||   ||||||||||||||||||||    
T  7206165 catatattatgcattgtctctaccaactgagctaagctcacgaggacaa 7206117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 11931645 - 11931597
Alignment:
Q  5 catatattatgcattgtccctacca---aagctaagctcacgaggacaa 50  Q
    |||||||||||||||||||||||||   || ||||||||||||||||||    
T  11931645 catatattatgcattgtccctaccaattaaactaagctcacgaggacaa 11931597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 45032733 - 45032685
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    ||||||||||||||||||||||||||   || |||||||||||||||||    
T  45032733 catatattatgcattgtccctaccaactgaggtaagctcacgaggacaa 45032685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 20455931 - 20455884
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||||| ||||||   |||||||||||||||||||    
T  20455931 catatattatgcattgtccataccaattgagctaagctcacgaggaca 20455884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 20565096 - 20565139
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgag 45  Q
    ||||||||||||||||||||||||||   |||||||||||||||    
T  20565096 catatattatgcattgtccctaccaactgagctaagctcacgag 20565139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 27244697 - 27244650
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    |||||||||||||||||||||| |||   |||||||||||||||||||    
T  27244697 catatattatgcattgtccctatcaactgagctaagctcacgaggaca 27244650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 34191326 - 34191373
Alignment:
Q  2 ttacatatattatgcattgtccctaccaa---agctaagctcacgagg 46  Q
    |||||||||||||||||||||||||||||   ||||||||||| ||||    
T  34191326 ttacatatattatgcattgtccctaccaactgagctaagctcatgagg 34191373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 6238587 - 6238633
Alignment:
Q  7 tatattatgcattgtccctacca---aagctaagctcacgaggacaa 50  Q
    |||||||||||||||||||||||   ||||||| |||||||||||||    
T  6238587 tatattatgcattgtccctaccaattaagctaaactcacgaggacaa 6238633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 9383230 - 9383276
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||| ||||||   ||||||||||||||||||    
T  9383230 catatattatgcattgtccataccaactgagctaagctcacgaggac 9383276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 9842223 - 9842269
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||| ||||||||||||||||||||   ||||||||||||||||||    
T  9842223 catattttatgcattgtccctaccaactgagctaagctcacgaggac 9842269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 10735852 - 10735898
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    |||||||||||||| |||||||||||   ||||||||||||||||||    
T  10735852 catatattatgcatcgtccctaccaactgagctaagctcacgaggac 10735898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 11560538 - 11560492
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||    
T  11560538 catatattatgcattgtccctaccaattgagctaagctcatgaggac 11560492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15381677 - 15381627
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||| ||||||||||| ||   ||||||||||||||||||    
T  15381677 cttacatatattatgtattgtccctactaactgagctaagctcacgaggac 15381627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 24592867 - 24592913
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||   ||||||| ||||||||||    
T  24592867 catatattatgcattgtccctaccaactgagctaagttcacgaggac 24592913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28202341 - 28202291
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    |||||||||||||||||||||||||| |||   ||||||||||||| ||||    
T  28202341 cttacatatattatgcattgtccctatcaactgagctaagctcacgtggac 28202291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 29544667 - 29544621
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||||||   |||||||||||| |||||    
T  29544667 catatattatgcattgtccctaccaattgagctaagctcactaggac 29544621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 35820326 - 35820368
Alignment:
Q  9 tattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||||||   ||||||||||||||||||    
T  35820326 tattatgcattgtccctaccaactgagctaagctcacgaggac 35820368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 2372 - 2324
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaa 50  Q
    ||||||||||||||||||||||||||   |||||||||||||| |||||    
T  2372 catatattatgcattgtccctaccaaccgagctaagctcacgacgacaa 2324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 48980526 - 48980478
Alignment:
Q  6 atatattatgcattgtccctaccaa---agctaagctcacgaggacaat 51  Q
    |||||||||||||||||| ||||||   |||||||||||||||||||||    
T  48980526 atatattatgcattgtccataccaactgagctaagctcacgaggacaat 48980478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7388056 - 7388107
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    |||||||||||||||||||||||| |||||   || ||||||||||||||||    
T  7388056 cttacatatattatgcattgtcccaaccaactgagttaagctcacgaggaca 7388107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 40187653 - 40187682
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa 30  Q
    ||||||||||||||||||||||||||||||    
T  40187653 cttacatatattatgcattgtccctaccaa 40187682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 5526769 - 5526719
Alignment:
Q  1 cttacatatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    |||| |||||||||||||||||| ||||||   ||||||||||||||||||    
T  5526769 cttatatatattatgcattgtccataccaactgagctaagctcacgaggac 5526719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 5579733 - 5579683
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaatc 52  Q
    ||||||||||||| ||||||||||||   |||||||||||| |||||||||    
T  5579733 catatattatgcactgtccctaccaactgagctaagctcacaaggacaatc 5579683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 10244767 - 10244721
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||| ||||||   ||||||||||||||||||    
T  10244767 catatattatgcattgtccataccaactgagctaagctcacgaggac 10244721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 21411562 - 21411534
Alignment:
Q  2 ttacatatattatgcattgtccctaccaa 30  Q
    |||||||||||||||||||||||||||||    
T  21411562 ttacatatattatgcattgtccctaccaa 21411534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 36803877 - 36803831
Alignment:
Q  6 atatattatgcattgtccctaccaa---agctaagctcacgaggaca 49  Q
    ||||||||||||||||| |||||||   |||||||||||||||||||    
T  36803877 atatattatgcattgtctctaccaactgagctaagctcacgaggaca 36803831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 39801746 - 39801700
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggac 48  Q
    ||||||||||||||||||| ||||||   ||||||||||||||||||    
T  39801746 catatattatgcattgtccataccaactgagctaagctcacgaggac 39801700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 185303 - 185253
Alignment:
Q  5 catatattatgcattgtccctaccaa---agctaagctcacgaggacaatc 52  Q
    ||||| ||||||||||||| ||||||   ||||||||||||||||||||||    
T  185303 catattttatgcattgtccataccaactgagctaagctcacgaggacaatc 185253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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