View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2064_high_3 (Length: 677)

Name: NF2064_high_3
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2064_high_3
NF2064_high_3
[»] chr4 (1 HSPs)
chr4 (1-674)||(28690508-28691176)


Alignment Details
Target: chr4 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Complemental strand, 28691176 - 28690508
Alignment:
Q  1 aatttaaagttaggaacttagtatctattaaaattattttacaagttaaatatacctgcatagctttcaccagcaatgtagaaatcatgtgatttaaatt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28691176 aatttaaagttaggaacttagtatttattaaaattattttacaagttaaatatacctgcatagctttcaccagcaatgtagaaatcatgtgatttgaatt 28691077  T
Q  101 gaggaaatcttttaaaccaattgatgaggaatgtgtgtgaatccttagctggtcaatgaaacaaagtattcatcaataaatcacattaagtgaaagtact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28691076 gaggaaatcttttaaaccaattgatgaggaatgtgtgtgaatccttagctggtcaatgaaacaaagtattcatcaataaatcacattaagtgaaagtact 28690977  T
Q  201 aataaaaattgtatcaatccttagatgatatatagaatcattgttacctgtaatggtgtcaccaagttcacttatatcactggtggtgttggtgtaggaa 300  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28690976 aataaaaattgtatcaatccttagatgatatatagaattattgttacctgtaatggtgtcaccaagttcacttatatcactggtggtgttggtgtaagaa 28690877  T
Q  301 aatcccactccagcaggggattcaagaaacaaaagatttgcagctgtagaaaagatttagtttatttttaaaattgtacaggatatacaaagtttatctc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28690876 aatcccactccagcaggggattcaagaaacaaaagatttgcagctgtagaaaagatttagtttatttttaaaattgtacaagatatacaaagtttatctc 28690777  T
Q  401 aaattaacaaatttacaatgaattgaactaccattattgcaatgcattgtgaaagttatcaat---ttgaaattgacccacctttattccaagaatatgg 497  Q
    |        |||||||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  28690776 a--------aatttacaatgaattgaactaccatttttgcaatgcattgtgaaagttatcaatttattgaaattgacccacctttattccaagaatatgg 28690685  T
Q  498 gttcaacttgagcttaggttggctgctattttgggggaaaaagggtccaagttcctctgcttctccatagccaattgaagaacagccagggcctgaaaca 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28690684 gttcaacttgagcttaggttggctgctattttgggggaaaaagggtccaagttcctctgcttctccatagccaattgaagaacaaccagggcctgaaaca 28690585  T
Q  598 ttaatacatatttactataatgcacatttatgtcacacttagacctatttatcaattcatattcctaattgtatatt 674  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| |||||||||||||    
T  28690584 ttaatacatatttactataatgcacatttatgtcacactcagacctagttatcaattcgtattgctaattgtatatt 28690508  T

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