View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_high_6 (Length: 492)
Name: NF2064_high_6
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Complemental strand, 50010668 - 50010200
Alignment:
| Q |
7 |
tagattattctcgtaaaagagaaagagcataagaatacttattagttagaagctcataatgaattatattaattgataaaagattatgaactgtggtgtc |
106 |
Q |
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| T |
50010668 |
tagatcattctcgtaaaagagaaagagcataagaatacttattagttagaagctcataatgaattatattaattgataaaagattatgaactgtggtgtc |
50010569 |
T |
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| Q |
107 |
ctatttatagagtgaaattgcaccaactaattgactaactcctactaattgactaattaacactaacataattatgtaacgttagtgttcttttaagcgt |
206 |
Q |
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| T |
50010568 |
ctatttatagagtgaaattgcaccaactaattgactaactcctactaattgactaattaacactaacataattatgtaacgttagtattcttttaagcgt |
50010469 |
T |
|
| Q |
207 |
tgcataaatcaattgtgttacgccccccttaaaagacgttgtattgnnnnnnnnagggnnnnnnnngttgtgtttttatcatatcaaggacatatatact |
306 |
Q |
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| T |
50010468 |
tgcttaaatcaattgtgctacgccccccttaaaagacgttgtattgttttttttagggaaaaaaaagttgtgtttttatcatatcaaggacatatatact |
50010369 |
T |
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| Q |
307 |
tacattttttaatgaataattaactattttgaaaattttaaggaatattttaagacactctcggtgccaaaatctttctaagataaccattcaagtctca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50010368 |
tacattttttaatgaataattaactattttgaaaattttaaggaatattttaagacactctcggtgccaaaatctttctaagataaccattcaagtctca |
50010269 |
T |
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| Q |
407 |
agcttatctcaatgaaagcatgaaatttccccatgtgagaaaggaaagtacgtggcaatgaaacacatg |
475 |
Q |
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| T |
50010268 |
agcttatctcaatgaaagcatgaaatttccccatgtgagaaaggaaagtacgtggcaatgaaacacatg |
50010200 |
T |
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