View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_low_11 (Length: 461)
Name: NF2064_low_11
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 12312527 - 12312075
Alignment:
| Q |
1 |
tctcttgcaactcctaaccatggtaaccaatgccaaattagtaagtcctttacaccctctaaccttcaaatcaaccaaatgaatacatgaaaccaacatt |
100 |
Q |
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| T |
12312527 |
tctcttgcaactcctaaccatggtaaccaatgccaaattagtaagccctttacaccctctaaccttcaaatcaaccaaatgaatacatgaaaccaacatt |
12312428 |
T |
|
| Q |
101 |
gaaacaaaatccttatcaaacaacatttcattatgagacaaatcaagtttcttcaattgcctcaaatgttgccctaaagtagcaagcaaacctttttccc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12312427 |
gaaataaaatccttatcaaacaacatttcattatgagacaaatcaagtttcttcaattgcctcaaatgttgccctaaagtagcaagcaaacctttttccc |
12312328 |
T |
|
| Q |
201 |
tttcaacaacatcacaatttatgagtgccaattcttcaagaccattactcattgctacacttagaaccttaagcccttcaccagttacaagacaacaact |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12312327 |
tttcaacaacatcacagtttatgagtgccaattcttcaagaccattactcaatgctacacttagaaccttaagcccttcaccagttacaagacaacaact |
12312228 |
T |
|
| Q |
301 |
ttgaagcctaatactcgaaaggcctcgaaaatttgtagtcatagcaatagcaaatagatgattgttttcaaggtccataggtaaacgaaaatcgagttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12312227 |
ttgaagcctaatactcgaaaggcctcgaaaatttgtagtcatagcaatagcaaatagatgattgttttcaaggtccataggtaaacgaaaatcgagttta |
12312128 |
T |
|
| Q |
401 |
tgcaaattattagaactacaatttgaaaagaaatgtagcaaaccctctctgct |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12312127 |
tgcaaattattagaactacaatttgaaaagaaatgtagcaaaccctctctgct |
12312075 |
T |
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Back To:
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 12235096 - 12235173
Alignment:
| Q |
339 |
tcatagcaatagcaaatagatgattgttttcaaggtccataggtaaacgaaaatcgagtttatgcaaattattagaact |
417 |
Q |
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||||||| ||| ||||||||||| || |||||||||||| | ||| |||||||| ||||||||| ||||||||||||| |
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| T |
12235096 |
tcatagccatataaaatagatgatggtattcaaggtccatggataatcgaaaatcaagtttatgc-aattattagaact |
12235173 |
T |
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