View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2064_low_12 (Length: 425)
Name: NF2064_low_12
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_low_12 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 4746123 - 4745717
Alignment:
| Q |
19 |
tggtcaccttgaataccatattaatatcccttaaagagccctttttcccttgattctttcagcatagcattgagacgttcacccgctattaaaaatagaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4746123 |
tggtcaccttgaataccatattaatatcccttaaagagccctctttcccttgattctttcagcataacattgagacgttcacccgctattaaaaatagaa |
4746024 |
T |
|
| Q |
119 |
atggtcagagtggatctacctattttgaactcctaaaatttgtggttgaggctaagcattctcgaatccaacatctctattttaccatgaaactaagaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4746023 |
atggtcagagtggatctacctatttttaactcctaaaatttgtggttgaggctaagcattctcgaatccaacatctctattttaccatgaaactaagaac |
4745924 |
T |
|
| Q |
219 |
taaggaaaataagctaaaaccgccatgaggaatatactataccttaaatttcagcataatacgttacgataaaaatttaccatgaaactcatgtttttat |
318 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4745923 |
taaggaaaataagctcaaagcgccatgaggaatatactataccttaaatttcagcataatacgttacgataaaaatttaccatgaaactcatgtttttat |
4745824 |
T |
|
| Q |
319 |
gaaaaatttggttgttctaaagtgtaattagatgcacaaattactgagaaggtttggtggtataaaaatcatgaaaactcttaacattgattgcgatttt |
418 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4745823 |
gaaaaaattggttgttctaaagtgtaattagatgcacaaattactgagaaggtttggtggtaaaaaaatcatgaaaactcttaacattgattgcgatttt |
4745724 |
T |
|
| Q |
419 |
gcaatca |
425 |
Q |
| |
|
||||||| |
|
|
| T |
4745723 |
gcaatca |
4745717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 373
Target Start/End: Original strand, 21157718 - 21157839
Alignment:
| Q |
252 |
atactataccttaaatttcagcataatacgttacgataaaaatttaccatgaaactcatgtttttatgaaaaatttggttgttctaaagtgtaattagat |
351 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||||||||||| || ||||||| ||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
21157718 |
atactatacattaaatttcatcataatacgttgtgataaaaatttgccgtgaaactaatgttttgatgaaaaatttggttgtattaaagtgtaactagat |
21157817 |
T |
|
| Q |
352 |
gcacaaattactgagaaggttt |
373 |
Q |
| |
|
||||||| |||||| ||||||| |
|
|
| T |
21157818 |
gcacaaactactgaaaaggttt |
21157839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 243 - 345
Target Start/End: Complemental strand, 28240577 - 28240474
Alignment:
| Q |
243 |
atgaggaatatactatacctt-aaatttcagcataatacgttacgataaaaatttaccatgaaactcatgtttttatgaaaaatttggttgttctaaagt |
341 |
Q |
| |
|
|||||||| |||| ||||||| |||||| |||| ||||| || | ||||| |||||||| ||||||||||||| ||||||| |||||||||||||| || |
|
|
| T |
28240577 |
atgaggaaaataccatacctttaaattttagcacaatacattgtggtaaaattttaccataaaactcatgttttgatgaaaattttggttgttctaatgt |
28240478 |
T |
|
| Q |
342 |
gtaa |
345 |
Q |
| |
|
|||| |
|
|
| T |
28240477 |
gtaa |
28240474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 28233002 - 28232951
Alignment:
| Q |
294 |
tttaccatgaaactcatgtttttatgaaaaatttggttgttctaaagtgtaa |
345 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
28233002 |
tttaccataaaactcatgttttgatgaaaattttggttgttctaaagtgtaa |
28232951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 361
Target Start/End: Complemental strand, 28332452 - 28332334
Alignment:
| Q |
244 |
tgaggaatatactataccttaaatttcagcataatacgttacgataaaaattt-accatgaaactcatgtttttatgaaaaatttggttgttctaaagtg |
342 |
Q |
| |
|
||||||| |||||||| |||||||||| ||||| |||| | |||| |||||| ||||| || ||||||||| |||||||||||| ||||||||||| |
|
|
| T |
28332452 |
tgaggaaaatactataacttaaatttccgcatattacgccatgatacaaattttaccataaatatcatgttttgatgaaaaatttgaatgttctaaagtt |
28332353 |
T |
|
| Q |
343 |
taattagatgcacaaatta |
361 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
28332352 |
tacccagatgcacaaatta |
28332334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 361
Target Start/End: Complemental strand, 28328380 - 28328267
Alignment:
| Q |
252 |
atactataccttaaatttcagcataatacgttacgataaaaattt-accatgaaactcatgttttt---atgaaaaatttggttgttctaaagtgtaatt |
347 |
Q |
| |
|
|||||||| |||||||||| |||||||||| || |||| |||||| ||||| || |||||||||| |||||||||||| ||||||||||| || |
|
|
| T |
28328380 |
atactataacttaaatttccgcataatacgctatgatacaaatttgaccataaatatcatgtttttttgatgaaaaatttgaatgttctaaagtttaccc |
28328281 |
T |
|
| Q |
348 |
agatgcacaaatta |
361 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28328280 |
agatgcacaaatta |
28328267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 678969 - 678897
Alignment:
| Q |
281 |
gttacgataaaaatttaccatgaaactcatgtttttatgaaaaatttggttgttctaaagtgtaattagatgca |
354 |
Q |
| |
|
|||| |||||| ||| ||| | ||||||||| ||| |||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
678969 |
gttatgataaagattcaccttaaaactcatggtttaatgacaa-tttggttgttctaaagtgtaaatagatgca |
678897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 358
Target Start/End: Complemental strand, 1639018 - 1638917
Alignment:
| Q |
256 |
tataccttaaatttcagcataatacgttacgataaaaatttaccatgaaactcatgtttttatgaaaaatttggttgttctaaagtgtaattagatgcac |
355 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||| |||||||||||||| | ||||| ||||||| |||||||||| |||||||||| ||||||||| |
|
|
| T |
1639018 |
tatacattaaatttcatcataatacgttgtgataaaa-tttaccatgaaactaacgttttgatgaaaattttggttgttttaaagtgtaactagatgcac |
1638920 |
T |
|
| Q |
356 |
aaa |
358 |
Q |
| |
|
||| |
|
|
| T |
1638919 |
aaa |
1638917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University