View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_low_13 (Length: 411)
Name: NF2064_low_13
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 39519582 - 39519938
Alignment:
| Q |
8 |
aagcaaaggtcaattaattgagaaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttc |
107 |
Q |
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| T |
39519582 |
aagcaaaggtcaattaattgagaaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttc |
39519681 |
T |
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| Q |
108 |
caagataacctggctgcaatggggtaaaaatgttgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggcta |
207 |
Q |
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| T |
39519682 |
caagataacctggctgcaatggggtaaaaatgttgaaagaaattgaaacaataacaaatattagatgaaaatggatagaaagagaacctgaacttggcta |
39519781 |
T |
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| Q |
208 |
agaactggaaaattttcaatggttttgtagtaatcagcaatgaaatcaaccatcttatgaccttgctctctcagttgctcagcatccattggcttcaact |
307 |
Q |
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| T |
39519782 |
agaactggaaaattttcaatggttttgtagtaatcagcaatgaaatcaaccatcatatgaccttgttctctcagttgctcagcatccattgccttcaact |
39519881 |
T |
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| Q |
308 |
cacttcctcctccttcttccctgtatgtatgtacattttcataaaacatcaaccaac |
364 |
Q |
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| T |
39519882 |
cacttcctcctccttcttccctgtatgtatgtacattttcataaaacatcaaccaac |
39519938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 22 - 364
Target Start/End: Original strand, 39532054 - 39532396
Alignment:
| Q |
22 |
taattgagaaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggc |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39532054 |
taattgagaaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggtagaagctttccaagataacctggc |
39532153 |
T |
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| Q |
122 |
tgcaatggggtaaaaatgttgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaatt |
221 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
39532154 |
tgcaatggggtaaaaatattgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaacagggaaatt |
39532253 |
T |
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| Q |
222 |
ttcaatggttttgtagtaatcagcaatgaaatcaaccatcttatgaccttgctctctcagttgctcagcatccattggcttcaactcacttcctcctcct |
321 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39532254 |
ttcaattgttttgtagtaatcagcaatgaaatcaaccatcatatgaccttgttctctcagttgctcagcatccattgccttcaactcacttcctcctcct |
39532353 |
T |
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| Q |
322 |
tcttccctgtatgtatgtacattttcataaaacatcaaccaac |
364 |
Q |
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| T |
39532354 |
tcttccctgtatgtatgtacattttcataaaacatcaaccaac |
39532396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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