View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_low_15 (Length: 376)
Name: NF2064_low_15
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 200 - 366
Target Start/End: Complemental strand, 39772878 - 39772712
Alignment:
| Q |
200 |
cctccgaaacaaaaacctcatcaacagtcctcaactaaccctatccacattcccccttttaagctcatgtctcccccacgcgccactcaaaaccacagac |
299 |
Q |
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| T |
39772878 |
cctccgaaacaaaaacctcatcaacagtcctcaactaaccctatccacattcccccttttaagctcatgcctcccccacgcgccactcaaaaccacagac |
39772779 |
T |
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| Q |
300 |
agcgcgtggatggaaacccacttgttagaagtgaaacaagctttaggttaccctctccaaccctttg |
366 |
Q |
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| T |
39772778 |
agcgcgtggatggaaacccacttgttagaagtgaaacaagcgttaggttaccctctccaaccctttg |
39772712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 39773062 - 39772944
Alignment:
| Q |
16 |
caattcaattccccaccaacaaaaccataacaccccacaaaaccctccacatttatgcactaaccacaaacccacttcctccaaacagtcctcaacgact |
115 |
Q |
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| T |
39773062 |
caattcaattccccaccaacaaaaccataacaccccaaaaaaccctccacatttatgcactaaccacaaacccacttcctcccaacagtcctcaacgact |
39772963 |
T |
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| Q |
116 |
tctcaaagaactcgaacag |
134 |
Q |
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| T |
39772962 |
tctcaaagaactcgaacag |
39772944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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