View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_low_16 (Length: 366)
Name: NF2064_low_16
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 31347830 - 31348175
Alignment:
| Q |
16 |
atatattgagtgcaaatggcatgataagggaatccctttcaggttactttggatgccttaatgttatttgcacaagaataaatagtgtatctttcgataa |
115 |
Q |
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| T |
31347830 |
atatattgagtgcaaatggcatgataagggaatccctttcaggttactttggatgttttaatgttatttgcacaagaataaatagtgtatctttcgataa |
31347929 |
T |
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| Q |
116 |
taatttactgaagaatgtttcctacacttcactcatgcattagagacgagtataatgatttagagtaagaaaatggaagagaataaggctatgaaacttg |
215 |
Q |
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| T |
31347930 |
taatttactgaagaatgtttcctacacttcactcatgcattagagacgagtagaatgatttagagtaagaaaatggaagagaataaggctatgaaacttg |
31348029 |
T |
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| Q |
216 |
ctagttcgtctcatgcattttgatggataccaatcatgtatttataacacatgatacaccacttcacatatgagaaagcaatctttcacccagagttgca |
315 |
Q |
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| T |
31348030 |
ctagttcgtcttatgcattttgatggataccaataatgtatttataacacatgatacaccacttcacatatgagaaagcaacctttcacccagagttgca |
31348129 |
T |
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| Q |
316 |
attctttgaaatcaggaccaagaaatgtatttgctcacttacattt |
361 |
Q |
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| T |
31348130 |
attctttgaaatcagaaccaagaaatgtattagctcacttacattt |
31348175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 32572516 - 32572574
Alignment:
| Q |
103 |
tatctttcgataataatttactgaagaatgtttcctacacttcactcatgcattagaga |
161 |
Q |
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| T |
32572516 |
tatcttttgataataatttacaaaaatatgtttcctacacttgaatcatgcattagaga |
32572574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 31892849 - 31892963
Alignment:
| Q |
102 |
gtatctttcgataataatttactgaagaatgtttcctacacttcactcatgcattagagacgagtataatgatttagagtaagaaaatggaagagaataa |
201 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||| | | ||||||||||| |||||||| | ||||||| |
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| T |
31892849 |
gtatctttcgataatagtttatagaagaatgtttcctacacttcactcgtgcattagagaagaggaggaggatttagagtacgaaaatgggaaagaataa |
31892948 |
T |
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| Q |
202 |
ggctatgaaacttgc |
216 |
Q |
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| T |
31892949 |
ggctatgaaacttgc |
31892963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 31892973 - 31893042
Alignment:
| Q |
248 |
atcatgtatttataacacatgatacaccacttcacatatgagaaagcaatctttcacccagagttgcaat |
317 |
Q |
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| T |
31892973 |
atcatatatttataacatatgatacaccacttcaaatatgagaaagcaacctttcaccaagagttacaat |
31893042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 3368518 - 3368581
Alignment:
| Q |
252 |
tgtatttataacacatgatacaccacttcacatatgagaaagcaatctttcacccagagttgca |
315 |
Q |
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| T |
3368518 |
tgtatttataacacatgatatactacttcgaatgtgagaaagaactctttcaccaagagttgca |
3368581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 44850442 - 44850555
Alignment:
| Q |
103 |
tatctttcgataataatttactgaagaatgtttcctacacttcactcatgcattagagacgagtataatgatttagagtaagaaaatggaagagaataag |
202 |
Q |
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| T |
44850442 |
tatctttcgatgatagattaaagaagaatgtttcctacatttcattcatgaattagagaagaggaggatgatctatagtaagaaaatgggagagaataag |
44850541 |
T |
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| Q |
203 |
gctatgaaacttgc |
216 |
Q |
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| T |
44850542 |
actatgaaacttgc |
44850555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 13311709 - 13311649
Alignment:
| Q |
101 |
tgtatctttcgataataatttactgaagaatgtttcctacacttcactcatgcattagaga |
161 |
Q |
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| T |
13311709 |
tgtatcttttgatagtaatttacggaaaaatatttactacacttcactcatgcgttagaga |
13311649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 317
Target Start/End: Complemental strand, 44680763 - 44680697
Alignment:
| Q |
250 |
catgtatttataacacatgatacaccacttcacatatgagaaagcaatctttcacccagagttgcaat |
317 |
Q |
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| T |
44680763 |
catgtatttataacatatgatacatcac-tcacatatgaaaaggcaacctttcacgaagagttgcaat |
44680697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 44680878 - 44680810
Alignment:
| Q |
133 |
tttcctacacttcactcatgcattagagacgagtataatgatttagagtaagaaaatggaagagaataag |
202 |
Q |
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| T |
44680878 |
tttcgtacacatcact-atgcattagagatgaggatgatgattcagagtgagaaaatgggagagaataag |
44680810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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