View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_low_17 (Length: 361)
Name: NF2064_low_17
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 14321360 - 14321693
Alignment:
| Q |
11 |
cacagataatggaagattaaccaatgagaatatatcatctattttcaaactaagctccaacttttcttcaccgacagttatcaatcgaacaatggccgaa |
110 |
Q |
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| T |
14321360 |
cacagataatggaagattaaccaatgagaatatatcatctattttcaaactaagctccaacttttcttcaccgacagttatcaatcgaacaatagctgaa |
14321459 |
T |
|
| Q |
111 |
gcagcaaacaaagtagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaccattagta |
210 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14321460 |
gcagcaaacaaagttgcaattacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaccattagta |
14321559 |
T |
|
| Q |
211 |
tcactatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcc |
310 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14321560 |
tcactatcactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaagtttattggtttgagtaaaagccaagattcc |
14321659 |
T |
|
| Q |
311 |
tagaacagtgtaacttatagccaaaagggtagtt |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
14321660 |
tagaacagtgtaacttatagccaaaagggtagtt |
14321693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 14304969 - 14305302
Alignment:
| Q |
11 |
cacagataatggaagattaaccaatgagaatatatcatctattttcaaactaagctccaacttttcttcaccgacagttatcaatcgaacaatggccgaa |
110 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
14304969 |
cacagataatggaagattaaccaatgagaatatgtcatctattctcaaactaagctccaacttttcttcacggacagttatcaatcgaacaatagccgaa |
14305068 |
T |
|
| Q |
111 |
gcagcaaacaaagtagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaccattagta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
14305069 |
acagcaaacaaagtagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaa |
14305168 |
T |
|
| Q |
211 |
tcactatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcc |
310 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14305169 |
tcactataactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcc |
14305268 |
T |
|
| Q |
311 |
tagaacagtgtaacttatagccaaaagggtagtt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
14305269 |
tagaacagtgtaacttatagccaaaagggtagtt |
14305302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 14283211 - 14283544
Alignment:
| Q |
11 |
cacagataatggaagattaaccaatgagaatatatcatctattttcaaactaagctccaacttttcttcaccgacagttatcaatcgaacaatggccgaa |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||| |||||| || ||||||| ||||||||| || ||| |
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| T |
14283211 |
cacagataatggaagattaaccaaagagaatatgtcatctattctcaaattaagctccaactttgtttcaccaacggttatcattcgaacaatagctgaa |
14283310 |
T |
|
| Q |
111 |
gcagcaaacaaagtagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaccattagta |
210 |
Q |
| |
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|||| ||||||| ||||||||||||||||||| |||||| ||||| |||| |||||||||| |||||| ||| |||||| |||||||||||||||| | |
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| T |
14283311 |
gcagtgaacaaagaagcaatcacaaagtttgctgcccaataaattctaagtggtaaagggtgtgtggaagctttcaactttatctcatgtaccattagaa |
14283410 |
T |
|
| Q |
211 |
tcactatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14283411 |
tcactatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcc |
14283510 |
T |
|
| Q |
311 |
tagaacagtgtaacttatagccaaaagggtagtt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
14283511 |
tagaacagtgtaacttatagccaaaagggtagtt |
14283544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 344
Target Start/End: Original strand, 25886045 - 25886375
Alignment:
| Q |
14 |
agataatggaagattaaccaatgagaatatatcatctattttcaaactaagctccaacttttcttcaccgacagttatcaatcgaacaatggccgaagca |
113 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| || |||| | || ||| | ||| | || || ||| | |
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| T |
25886045 |
agataatggaagattaaccaatgagaatatgtcatctattctcaaactaagttccaacttctcctcactggcatttacaattcggaaaacagctgaaata |
25886144 |
T |
|
| Q |
114 |
gcaaacaaagtagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaccattagtatca |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
25886145 |
gcaaacaaagaagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaacattagaatca |
25886244 |
T |
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| Q |
214 |
ctatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcctag |
313 |
Q |
| |
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| || || |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25886245 |
caatcacaatgttgactactgcttgaaacaaccgaaaaggtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattcctag |
25886344 |
T |
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| Q |
314 |
aacagtgtaacttatagccaaaagggtagtt |
344 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
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| T |
25886345 |
aacagtgtaagttatagccaaaagggtagtt |
25886375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 44349888 - 44350219
Alignment:
| Q |
13 |
cagataatggaagattaaccaatgagaatatatcatctattttcaaactaagctccaacttttcttcaccgacagttatcaatcgaacaatggccgaagc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||| | | ||| | ||| | || || ||| |
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| T |
44349888 |
cagataatggaagattaaccaatgagaatatatcatctattctcaaactaagttccattttttcctcactggtatttacaattcggaaaacagctgaaat |
44349987 |
T |
|
| Q |
113 |
agcaaacaaagtagcaatcacaaagtttgctatccaatagattcttagtgataaagggtgtttggaagatttgaactttttctcatgtaccattagtatc |
212 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |||||| ||| |
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| T |
44349988 |
agcaaacaaagaagcaatcacaaagtttactatccaatagattcttagggataaagggtgtttggaagatttgaacttttcctcgtgtaacattagaatc |
44350087 |
T |
|
| Q |
213 |
actatgactatgttggttattgcttgaaacaaccgaaaaagtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaagattccta |
312 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
44350088 |
actattactatgttgactacagcttgaaacaaccgaaaaggtgcttctatttgtttccatgaagaaaggttattggtttgagtaaaagccaatattccta |
44350187 |
T |
|
| Q |
313 |
gaacagtgtaacttatagccaaaagggtagtt |
344 |
Q |
| |
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||||||| ||| |||||||||||| ||||||| |
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|
| T |
44350188 |
gaacagtttaagttatagccaaaatggtagtt |
44350219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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