View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_low_20 (Length: 338)
Name: NF2064_low_20
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_low_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 40552559 - 40552841
Alignment:
| Q |
11 |
ttattcttcgtatctgttttatctttctgtaatatgataacaatattgattaatttcatgttttcaagtaaaggttctgtacagttgtgataaattatct |
110 |
Q |
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| T |
40552559 |
ttattcttcgtatctgttttatctttctgtaatatgataacaatattgattaatttcatgttttcaagtaaaggttctgtacagttatgataaattatct |
40552658 |
T |
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| Q |
111 |
ggtgatgtatatataacaataatatggcatatggaatttggtgtttatgtttaatgtcttaattccacgtccccattatatttggtgggtcaaaagattt |
210 |
Q |
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| T |
40552659 |
ggtgatgtataaataacaataatatggcatatggaatttggtgtttatgtttaatgtcttaattccacgtccccattatatttggtgggtcaaaagattt |
40552758 |
T |
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| Q |
211 |
atttatttttatgactatggttagtttcattctgaatagcagttgttataagtgattttattttcttagtaatacccttgtac |
293 |
Q |
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| T |
40552759 |
atttatttttatgactatggttggtttcattctgaatagcagttgttataagtgattttattttcttagtaatacccttgtac |
40552841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 22137532 - 22137753
Alignment:
| Q |
11 |
ttattcttcgtatctgttttatctttctgtaatatgataacaatattgattaatttcatgttttcaagtaaaggttctgtacagttgtgataaattatct |
110 |
Q |
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| T |
22137532 |
ttattcttcgtatctgttttatctttctgtaatatgataacaatattgattaatttcatgttttcaagtaaaggttctgtacagttatgataaattatct |
22137631 |
T |
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| Q |
111 |
ggtgatgtatatataacaataatatggcatatggaatttggtgtttatgtttaatgtcttaattccacgtccccattatatttggtgggtcaaaagattt |
210 |
Q |
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| T |
22137632 |
ggtgatgtataaataacaataatatggcatatggaatttggtgtttatgtttaatgtcttaattccacgtccccattatatttggtgggtcaaaagattt |
22137731 |
T |
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| Q |
211 |
atttatttttatgactatggtt |
232 |
Q |
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| T |
22137732 |
atttatttttatgactatggtt |
22137753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 19331746 - 19331782
Alignment:
| Q |
302 |
cactacaaatggtagggaaaaacacccaaaagagccc |
338 |
Q |
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| T |
19331746 |
cactacaaatggaagggaaaaacacacaaaagagccc |
19331782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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