View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_low_22 (Length: 333)
Name: NF2064_low_22
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 51360393 - 51360709
Alignment:
| Q |
1 |
accaccaccaagtgcaagcaagtatattgaagcgtagaagagtaaagcttttgtgccatgtaaacaactcttttttccacatagttctggctgaagtttc |
100 |
Q |
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| T |
51360393 |
accaccaccaagtgcaagcaagtatattgaagcgtagaagagtaaagcttttgtgccatgtaaacaactcttttttccacatagttctggctgaagtttc |
51360492 |
T |
|
| Q |
101 |
tcatcatgggattgaatcacaagtaaggcgtatccctgcaattcaaaaaatactaacatcaagtcaatgtcttgagtaagttaatcaaataacgaacttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51360493 |
tcatcatgggattgaatcacaagtaaggcgtatccctgcaattcaaaaaatactaacatcaagtcaatgtcttgagtaagttaatcaaataatgaacttg |
51360592 |
T |
|
| Q |
201 |
tttaacgtaatactttaccaacaactgaattatgccaaagaggatgcatgtgttgagacgattcatatatgtatcggagatgaaccctccaacgacagtc |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51360593 |
tttaatgtaatactttaccaacaactgaattatgccaaagaggatgcatgtgttgagacgattcatatatgtatcggagatgaaccctccaacgacagtc |
51360692 |
T |
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| Q |
301 |
aacaagaaagtagttcc |
317 |
Q |
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||||||||||||||||| |
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| T |
51360693 |
aacaagaaagtagttcc |
51360709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 51351024 - 51351145
Alignment:
| Q |
1 |
accaccaccaagtgcaagcaagtatattgaagcgtagaagagtaaagcttttgtgccatgtaaacaactcttttttccacatagttctggctgaagtttc |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| |||||||| | |||||||| |||| ||||||||||||| |
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| T |
51351024 |
accaccaccaagtgcaagcaagtatatcgaagcgtagaagaacaaagcttttgtgacatgcaaacaactttgttttccac--agttgtggctgaagtttc |
51351121 |
T |
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| Q |
101 |
tcatcatgggattgaatcacaagt |
124 |
Q |
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||| |||||||||||||||||||| |
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| T |
51351122 |
tcagcatgggattgaatcacaagt |
51351145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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