View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2064_low_24 (Length: 325)

Name: NF2064_low_24
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2064_low_24
NF2064_low_24
[»] chr8 (1 HSPs)
chr8 (21-319)||(45049747-45050045)


Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 45049747 - 45050045
Alignment:
Q  21 ctcagtgccataatgtgttcatgcatcttccatttaacatgctttgagcactagggttagggtttggggttggaaagttatttatgattcatagcagtac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45049747 ctcagtgccataatgtgttcatgcatcttccatttaacatgctttgagcactagggttagggtttggggttggaaagttatttatgattcatagcagtac 45049846  T
Q  121 tctttttgagaaagtctatgggcgagttaattcttgaggacactaaaatgcaatactctttttaaggtcctacgaaattcctgaaatagatattcctctc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45049847 tctttttgagaaagtctatgggcgagttaattcttgaggacactaaaatgcaatactctttttaaggtcctacgaaattcctgaaatagatattcctctc 45049946  T
Q  221 atgaaaaatgcaccaatggaatcgtcttggaataagtgcgtctagcttggagtgtccttttgtgcatatggttgaaacttttgcctctttctctgctcc 319  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45049947 atgaaaaatgcacctatggaatcgtcttggaataagtgcgtctagcttggagtgtccttttgtgcatatggttgaaacttttgcctcttcctctgctcc 45050045  T

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