View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_low_28 (Length: 270)
Name: NF2064_low_28
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 36363641 - 36363863
Alignment:
| Q |
23 |
tgagcatgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaaatggtatcc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36363641 |
tgagcatgctcctgagatgtcaacatgtcataaacaccacgaacggaataacccccctatcgggtccaaatgccactgccacacatcagaaatggtatcc |
36363740 |
T |
|
| Q |
123 |
tgcaaagaaacggtaagtagtaatgccctacactcccctagcagcactcccctagcagctcttactcccacaaccacaaactatgacaccacctccacgc |
222 |
Q |
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||||||||||| ||||||| |||||||||| |||||| |||||||||||| |||||||| |||||||||||||| |||||||||||| |
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| T |
36363741 |
tgcaaagaaacagtaagtaataatgcccta--------------cactcctctagcagctcttcctcccacacccacaaactatgacgccacctccacgc |
36363826 |
T |
|
| Q |
223 |
ctcaccccctgccttccacccacacaaacacaggttc |
259 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
36363827 |
ctcaccccctgccttccacccacacaaacacatgttc |
36363863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 39931589 - 39931454
Alignment:
| Q |
23 |
tgagcatgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaaatggtatcc |
122 |
Q |
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||||||||||||||| |||||| ||||||||| ||||||| ||||||||||| ||||||| ||||||| ||||| | ||| |||||||||||||||||| |
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| T |
39931589 |
tgagcatgctcctgatatgtcagcatgtcatagacaccacgaacggaataac-cccctattaggtccaagtaccagtaccaaacatcagaaatggtatcc |
39931491 |
T |
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| Q |
123 |
tgc-aaagaaacggtaagtagtaatgccctacactcc |
158 |
Q |
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|| | |||||| |||||| | ||||| |||||||| |
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| T |
39931490 |
agcgagagaaactgtaagtgatgatgccgtacactcc |
39931454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 10704433 - 10704328
Alignment:
| Q |
27 |
catgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaaatggtatcctgca |
126 |
Q |
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||||||| | |||||||| ||| |||||||| |||| ||| || |||||| | |||| ||||||||| |||| |||||||||| ||||| |||||||||| |
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| T |
10704433 |
catgctcattagatgtcagcatttcataaaccccacgaacagagtaaccctc-tatcaggtccaaatgccaccgccacacatctgaaatagtatcctgca |
10704335 |
T |
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| Q |
127 |
aagaaac |
133 |
Q |
| |
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| ||||| |
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| T |
10704334 |
atgaaac |
10704328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 5041633 - 5041770
Alignment:
| Q |
23 |
tgagcatgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaaatggtatcc |
122 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| || |||||| ||||||||||||||||||||| |
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| T |
5041633 |
tgagcatgctcttgagatgtcaacatgtcataaacaccacgaacagaataacccccctatcaggtccagatgccactgtcacacatcagaaatggtatcc |
5041732 |
T |
|
| Q |
123 |
--tgcaaagaaacggtaagtagtaatgccctacactcc |
158 |
Q |
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| T |
5041733 |
tatacaaagaaattgtcagtagtaatgccctacactcc |
5041770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 33185559 - 33185662
Alignment:
| Q |
28 |
atgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaaatggtatcctgcaa |
127 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||| ||||||| | |||| |||||| ||||||||||| |||| | ||||||||||| |
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| T |
33185559 |
atgctcctatgatgtcaacatgtcataaacaccatgaacggagtaaccccac--tcggatccaaaagccactgccacatatcattagatgtatcctgcaa |
33185656 |
T |
|
| Q |
128 |
agaaac |
133 |
Q |
| |
|
|||||| |
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| T |
33185657 |
agaaac |
33185662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 37445221 - 37445360
Alignment:
| Q |
26 |
gcatgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaaatggtatcctgc |
125 |
Q |
| |
|
|||||||| || ||||||| ||||||||||||||| |||| |||||||||||||||||| |||||||| ||||| || || ||||||| || |||| | |
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| T |
37445221 |
gcatgctcttgggatgtcagcatgtcataaacaccgcaaatggaataacccccctatcgcgtccaaatgccactaccgcatatcagaagaagtttcctac |
37445320 |
T |
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| Q |
126 |
aaagaaacggtaagtagtaatgccctacactcccctagca |
165 |
Q |
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|||||||| | |||||||||||||||||||| |||||| |
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| T |
37445321 |
aaagaaacatcatgtagtaatgccctacactccactagca |
37445360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 37437141 - 37437245
Alignment:
| Q |
60 |
cacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaaatggtatcctgcaaagaaacggtaagtagtaatgccctacactccc |
159 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||||||||||| ||||||| | || |||| ||| ||||| | ||||||| ||||||| |||| |
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| T |
37437141 |
cacaaacggaataaccccta-atcgggttcaaatgccactgccacatatcagaagtagtgtcctacaatgaaacatcatgtagtaacgccctaccctccg |
37437239 |
T |
|
| Q |
160 |
ctagca |
165 |
Q |
| |
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|||||| |
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| T |
37437240 |
ctagca |
37437245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 31742379 - 31742465
Alignment:
| Q |
26 |
gcatgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaa |
113 |
Q |
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|||||||||| ||||||| |||||||| |||||||| |||||||||| ||||||| ||||||||||| |||||||||| ||||||| |
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| T |
31742379 |
gcatgctcctatgatgtcagcatgtcatcaacaccacgaacggaataa-ccccctaccgggtccaaatgtcactgccacatatcagaa |
31742465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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