View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_low_29 (Length: 260)
Name: NF2064_low_29
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 14321845 - 14322042
Alignment:
| Q |
16 |
acaaggaatcaagagcagaaacaagaagtctctgaggacatggagatagcaaaatgaaccttagccattgaattatgagttctggtgtagaggaagatga |
115 |
Q |
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| T |
14321845 |
acaaggaatcaagagcagaaacaagaagtctctgaggacatggagatagcaaaatgaaccttaaccattgaattatgagttctggtgtagaggaagatga |
14321944 |
T |
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| Q |
116 |
atctacaggcaaaagggtgcatgaaggagaagttagccatgaagaagtagacattgttaaaagattagtatgtgatgaaaactgataaggtttcatat |
213 |
Q |
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| T |
14321945 |
atctacaggtaaaagggtgcatgaaggagaagttagccatgaagaagtagacattgttaaaagattattatgtgatgaaaactgataaggtttcatat |
14322042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 14283696 - 14283842
Alignment:
| Q |
16 |
acaaggaatcaagagcagaaacaagaagtctctgaggacatggagatagcaaaatgaaccttagccattgaattatgagttctggtgtagaggaagatga |
115 |
Q |
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| T |
14283696 |
acaaggaatcaagagcagaaagaagaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagtatgaattgtggtgtagaggaagatga |
14283795 |
T |
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| Q |
116 |
atctacaggcaaaagggtgcatgaaggagaagttagccatgaagaag |
162 |
Q |
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| T |
14283796 |
atgtataggtaaaagggtgcatgaaggagaagttagccatgcagaag |
14283842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 14305454 - 14305604
Alignment:
| Q |
16 |
acaaggaatcaagagcagaaacaagaagtctctgaggacatggagatagcaaaatgaaccttagccattgaattatgagttctggtgtagaggaagatga |
115 |
Q |
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| T |
14305454 |
acaaggaatcaagagcagaaagtagaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagaatgaattgtggtgtagaagaagatga |
14305553 |
T |
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| Q |
116 |
atctacaggcaaaagggtgcatgaaggagaagttagccatgaagaagtaga |
166 |
Q |
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| T |
14305554 |
atgtaaaggtaaaagggtgcatgaaggagaagttagccatgcagaagtaga |
14305604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 14270920 - 14271106
Alignment:
| Q |
16 |
acaaggaatcaagagcagaaacaagaagtctctgaggacatggagatagcaaaatgaaccttagccattgaattatgagttctggtgtagaggaagatga |
115 |
Q |
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| T |
14270920 |
acaaggaatcaagagaagaaagaagaagcctctgaggacatggagatcggaaaatgaaccttaaccattgaagaatgaggttt------------gatga |
14271007 |
T |
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| Q |
116 |
atctacaggcaaaagggtgcatgaaggagaagttagccatgaagaagt---agacattgttaaaagattagtatgtgatgaaaactgataaggtttcat |
211 |
Q |
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| T |
14271008 |
atgtataggtaaaagggtgcatgaaggagaagttagccatgatgaagtagaagacatggttaaaagattataacgtgatgataattaatatggtttcat |
14271106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 25886515 - 25886661
Alignment:
| Q |
16 |
acaaggaatcaagagcagaaacaagaagtctctgaggacatggagatagcaaaatgaaccttagccattgaattatgagttctggtgtagaggaagatga |
115 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||| |||| || ||| |||||||| |||||||| |||||||||||||||||| |
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| T |
25886515 |
acaaggaatcaagagcagaaaggagaagtctttgaggacatggagataggaaaagaaaggttaaccattgaagtatgagttgtggtgtagaggaagatga |
25886614 |
T |
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| Q |
116 |
atctacaggcaaaagggtgcatgaaggagaagttagccatgaagaag |
162 |
Q |
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| T |
25886615 |
atctataggtaaaagggtgcatgaaggagaagttagccatgaagaag |
25886661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 44350366 - 44350525
Alignment:
| Q |
20 |
ggaatcaagagcagaaacaagaagtctctgaggacatgg-agatagcaaaatgaaccttagccattgaattatgagttctggtgtagaggaagatgaatc |
118 |
Q |
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||||||||||||||||| |||||||| ||||||||| |||||| |||| || ||| |||||||| |||||||| ||||||||||||||||| ||| |
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| T |
44350366 |
ggaatcaagagcagaaaggagaagtctttgaggacatttcagataggaaaagaaaggttaaccattgaagtatgagttgtggtgtagaggaagatggatc |
44350465 |
T |
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| Q |
119 |
tacaggcaaaagggtgcatgaaggagaagttagccatgaagaagtagacattgttaaaag |
178 |
Q |
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| T |
44350466 |
tgtaggtaaaagggtgcatgaaggagaagttagccatgaagaagaagacatggttaaaag |
44350525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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