View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2064_low_35 (Length: 226)

Name: NF2064_low_35
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2064_low_35
NF2064_low_35
[»] chr3 (47 HSPs)
chr3 (1-226)||(28003339-28003564)
chr3 (53-226)||(28151081-28151254)
chr3 (1-225)||(27979622-27979846)
chr3 (1-202)||(28036606-28036807)
chr3 (1-204)||(27919515-27919718)
chr3 (109-226)||(11420178-11420295)
chr3 (106-197)||(17745306-17745397)
chr3 (106-197)||(19046626-19046717)
chr3 (1-104)||(27459573-27459676)
chr3 (120-197)||(26114053-26114130)
chr3 (107-226)||(28184931-28185050)
chr3 (114-215)||(28149075-28149176)
chr3 (120-190)||(26128809-26128879)
chr3 (135-197)||(27459738-27459800)
chr3 (124-214)||(28480591-28480681)
chr3 (120-214)||(28509770-28509864)
chr3 (39-101)||(8539821-8539883)
chr3 (107-226)||(28082869-28082988)
chr3 (1-104)||(11420332-11420435)
chr3 (39-101)||(26202077-26202139)
chr3 (46-104)||(27390826-27390884)
chr3 (39-104)||(18025250-18025315)
chr3 (39-104)||(26179544-26179609)
chr3 (39-100)||(26235975-26236036)
chr3 (146-194)||(26202529-26202577)
chr3 (107-195)||(28054571-28054659)
chr3 (107-195)||(28064996-28065084)
chr3 (39-102)||(28005112-28005175)
chr3 (39-101)||(26128190-26128252)
chr3 (39-101)||(26178240-26178302)
chr3 (47-104)||(19476136-19476193)
chr3 (47-104)||(26129502-26129559)
chr3 (39-104)||(27377540-27377605)
chr3 (44-104)||(17745208-17745268)
chr3 (44-104)||(19046528-19046588)
chr3 (162-226)||(28134767-28134831)
chr3 (62-101)||(18077341-18077380)
chr3 (123-190)||(26111550-26111617)
chr3 (123-197)||(26128568-26128643)
chr3 (123-197)||(26178618-26178693)
chr3 (123-190)||(26205834-26205901)
chr3 (70-104)||(26111203-26111237)
chr3 (70-104)||(26205486-26205520)
chr3 (70-104)||(26233549-26233583)
chr3 (39-100)||(26140136-26140197)
chr3 (47-104)||(26630614-26630671)
chr3 (123-179)||(26233879-26233935)
[»] chr7 (1 HSPs)
chr7 (107-204)||(8692895-8692992)
[»] chr2 (1 HSPs)
chr2 (39-104)||(22392469-22392534)
[»] scaffold0257 (1 HSPs)
scaffold0257 (114-210)||(18500-18596)
[»] scaffold0043 (1 HSPs)
scaffold0043 (44-104)||(53882-53942)
[»] scaffold1142 (2 HSPs)
scaffold1142 (39-104)||(1332-1397)
scaffold1142 (120-197)||(1205-1286)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28003564 - 28003339
Alignment:
Q  1 ttctgaaatggtggacaaagttgatgctacannnnnnnctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatattt 100  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  28003564 ttctgaaatggtggacaaagttgatgctacatttttttctgatgttgaaccctccaactgattgcataacatgaaaatgtaaattacttgcaacatattt 28003465  T
Q  101 ttaacgtttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28003464 ttaacgtttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtaga 28003365  T
Q  201 cgtttttgctccatttcttgttcatt 226  Q
    ||||||||||||||||||||||||||    
T  28003364 cgtttttgctccatttcttgttcatt 28003339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 53 - 226
Target Start/End: Complemental strand, 28151254 - 28151081
Alignment:
Q  53 tccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaacgtttcttttttagatttatatgcacgatgaggtggtactatattaca 152  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28151254 tccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaacgtttcttttttagatttatatgcacaatgaggtggtactatattaca 28151155  T
Q  153 ttattttcttgagaaggtttgacggtagcatcagtttctccaagtagacgtttttgctccatttcttgttcatt 226  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  28151154 ttattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttttgctccatttcttgttcatt 28151081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27979846 - 27979622
Alignment:
Q  1 ttctgaaatggtggacaaagttgatgctacannnnnnnctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatattt 100  Q
    |||| ||||||| |||||||||||||| ||        |||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  27979846 ttctaaaatggttgacaaagttgatgcgacttttgtttctgacgttgaaccctccaactgattgcataacaagaaaatgtaaattagttgcaacatattt 27979747  T
Q  101 ttaacgtttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtaga 200  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  27979746 ttaatgtttcttttttagctttatattcacaatgaggtggtactatattacattattttctggagaaggtttgacggtagcatcagtttctccaagtgga 27979647  T
Q  201 cgtttttgctccatttcttgttcat 225  Q
    |||| ||||||||||| ||||||||    
T  27979646 cgttgttgctccatttgttgttcat 27979622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 28036807 - 28036606
Alignment:
Q  1 ttctgaaatggtggacaaagttgatgctacannnnnnnctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatattt 100  Q
    ||||||||| |||||  ||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  28036807 ttctgaaattgtggaataagttgatgctacatttttttctgatgttgaaccctccaactgattgcataacatgaaaatgtaaattagttgcatcatattt 28036708  T
Q  101 ttaacgtttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtaga 200  Q
    |||| ||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||    
T  28036707 ttaatgtttcatttttagctttatatgcacaatgaggtggtactatattacgttattttctggagaagctttgacggtagcatcagtttctccaagtgga 28036608  T
Q  201 cg 202  Q
    ||    
T  28036607 cg 28036606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 27919718 - 27919515
Alignment:
Q  1 ttctgaaatggtggacaaagttgatgctacannnnnnnctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatattt 100  Q
    |||| ||||||| |||||||||||||| ||        |||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  27919718 ttctaaaatggttgacaaagttgatgcgacttttgtttctgacgttgaaccctccaactgattgcataacaagaaaatgtaaattagttgcaacatattt 27919619  T
Q  101 ttaacgtttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtaga 200  Q
    |||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||    
T  27919618 ttaatgtttcttttttagctttatattcacaatgaggtggtactatattacattattttcttgagaaggtttgacggtagtatcaatttctccaagtgga 27919519  T
Q  201 cgtt 204  Q
    ||||    
T  27919518 cgtt 27919515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 11420295 - 11420178
Alignment:
Q  109 tcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtagacgtttttg 208  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||  ||||||| ||  ||||||||||||||||||||||||| |||||| |||||| |||    
T  11420295 tcttttttagttttatatgcacaatgagatggtactatattactgtattttcctgcaaaggtttgacggtagcatcagtttcaccaagtggacgttgttg 11420196  T
Q  209 ctccatttcttgttcatt 226  Q
    |||||||  |||||||||    
T  11420195 ctccattggttgttcatt 11420178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 17745306 - 17745397
Alignment:
Q  106 gtttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagt 197  Q
    ||||| |||||||  ||||||  || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17745306 gtttcatttttagtcttatataaacaatgaggtggtactatattacattattttcctgagaaggtttgacggtagcatcagtttctccaagt 17745397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 19046626 - 19046717
Alignment:
Q  106 gtttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagt 197  Q
    ||||| |||||||  ||||||  || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19046626 gtttcatttttagtcttatataaacaatgaggtggtactatattacattattttcctgagaaggtttgacggtagcatcagtttctccaagt 19046717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 27459573 - 27459676
Alignment:
Q  1 ttctgaaatggtggacaaagttgatgctacannnnnnnctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatattt 100  Q
    |||||||||||| ||||||||||||||||||       |||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||    
T  27459573 ttctgaaatggtcgacaaagttgatgctacatttttttctgacgttgaaccctccaactgcttgcataacatgaaaatgtaaattagttgcaacttattt 27459672  T
Q  101 ttaa 104  Q
    ||||    
T  27459673 ttaa 27459676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 26114053 - 26114130
Alignment:
Q  120 tttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagt 197  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  26114053 tttatatgcacaatgagatggtactatattacattatcttcttgagaaggtttgatggtagtatcagtttctccaagt 26114130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 28185050 - 28184931
Alignment:
Q  107 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtagacgtttt 206  Q
    |||| ||||||| ||||||||||| | | |||||||| | ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||||||||      
T  28185050 tttcatttttagctttatatgcacaacgcggtggtacgacattacatgatttacctgagaaggtttgacggtagtatcaggttctccaagtagacgttgc 28184951  T
Q  207 tgctccatttcttgttcatt 226  Q
    |||||||||  |||||||||    
T  28184950 tgctccattgattgttcatt 28184931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 28149176 - 28149075
Alignment:
Q  114 tttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtagacgtttttgctcca 213  Q
    ||||| ||||||||||| ||| |||||||| ||||||||| |||| | |||||||||||||||| || ||||||||||||||||  ||||| ||| ||||    
T  28149176 tttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggcagtatcagtttctccaagtgaacgttgttggtcca 28149077  T
Q  214 tt 215  Q
    ||    
T  28149076 tt 28149075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 26128809 - 26128879
Alignment:
Q  120 tttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttc 190  Q
    ||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||    
T  26128809 tttatttgcacgatgagatggtactatattacattatcttcctgagaaggtttgatggtagtatcagtttc 26128879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 27459738 - 27459800
Alignment:
Q  135 aggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagt 197  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||    
T  27459738 aggtggtattatattacattattttcctgagaaggtttgacgctagcatcagtttctgcaagt 27459800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 28480591 - 28480681
Alignment:
Q  124 tatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtagacgtttttgctccat 214  Q
    ||||||| ||| |||||||| ||||||||| |||| | |||||||||||||||| || ||| | ||||||||||||||||| |||||||||    
T  28480591 tatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacgggagtatcggcttctccaagtagacgttgttgctccat 28480681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 28509770 - 28509864
Alignment:
Q  120 tttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtagacgtttttgctccat 214  Q
    ||||||||||| ||| |||||||| ||||||| | |||| | |||||||||||||||| || ||| | ||||||||||||||||| |||||||||    
T  28509770 tttatatgcacaatgcggtggtacgatattacttgatttacctgagaaggtttgacggcagaatcggcttctccaagtagacgttgttgctccat 28509864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 8539821 - 8539883
Alignment:
Q  39 ctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttt 101  Q
    ||||||| |||||||||| |||||||||||| |||||||||||||||||||||  ||||||||    
T  8539821 ctgatgtagaaccctccaactgattgcataaaatgaaaatgtaaattagttgcgtcatatttt 8539883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 28082988 - 28082869
Alignment:
Q  107 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtagacgtttt 206  Q
    |||| ||||||| ||||||||||| |||   |||||  ||||| ||| |||| | ||| |||||||||||| || |||||||||||||| |||||||| |    
T  28082988 tttcatttttagctttatatgcacaatgtattggtatgatattgcatgatttacctgaaaaggtttgacggcagtatcagtttctccaactagacgttgt 28082889  T
Q  207 tgctccatttcttgttcatt 226  Q
    || ||||||  |||||||||    
T  28082888 tggtccattgtttgttcatt 28082869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 11420435 - 11420332
Alignment:
Q  1 ttctgaaatggtggacaaagttgatgctacannnnnnnctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatattt 100  Q
    ||||||||||||||| | |||||||||||||       |||| ||||||||| | | ||||||  | |  ||||||||||||||||||||||||||||||    
T  11420435 ttctgaaatggtggaaagagttgatgctacatttttttctgacgttgaacccacgaactgatttaacatgatgaaaatgtaaattagttgcaacatattt 11420336  T
Q  101 ttaa 104  Q
    ||||    
T  11420335 ttaa 11420332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 26202077 - 26202139
Alignment:
Q  39 ctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttt 101  Q
    ||||||| |||||||||| |||| |||||| |||||||||||||||||||||||  |||||||    
T  26202077 ctgatgtagaaccctccagctgaatgcatagcatgaaaatgtaaattagttgcattatatttt 26202139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 27390826 - 27390884
Alignment:
Q  46 tgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 104  Q
    ||||||||||| || |||||||||||||||||| ||||||||||||| |||||| ||||    
T  27390826 tgaaccctccaactaattgcataacatgaaaatttaaattagttgcagcatattattaa 27390884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 18025250 - 18025315
Alignment:
Q  39 ctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 104  Q
    |||||| ||||| | ||| ||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  18025250 ctgatggtgaactcgccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaa 18025315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 26179544 - 26179609
Alignment:
Q  39 ctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 104  Q
    ||||||| |||||||||| || |||||||  ||||||||||||| ||||||||| |||||||||||    
T  26179544 ctgatgtagaaccctccaactaattgcattgcatgaaaatgtaagttagttgcagcatatttttaa 26179609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 26235975 - 26236036
Alignment:
Q  39 ctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatattt 100  Q
    ||||||| |||||||||| || |||||||  ||||||||||||||||||||||| |||||||    
T  26235975 ctgatgtagaaccctccaactaattgcattgcatgaaaatgtaaattagttgcagcatattt 26236036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 26202529 - 26202577
Alignment:
Q  146 tattacattattttcttgagaaggtttgacggtagcatcagtttctcca 194  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  26202529 tattacattatattcttgagaaggtttgatggtagtatcagtttctcca 26202577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 28054659 - 28054571
Alignment:
Q  107 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaa 195  Q
    |||| ||||||  |||||||||||||||  ||||||| ||| ||||| |||| | |||||||||||||||| || |||| |||||||||    
T  28054659 tttcatttttatctttatatgcacgatgcagtggtacaataatacatgatttacctgagaaggtttgacggcagtatcaatttctccaa 28054571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 28065084 - 28064996
Alignment:
Q  107 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaa 195  Q
    |||| ||||||  |||||||||||||||  ||||||| ||| ||||| |||| | |||||||||||||||| || |||| |||||||||    
T  28065084 tttcatttttatctttatatgcacgatgcagtggtacaataatacatgatttacctgagaaggtttgacggcagtatcaatttctccaa 28064996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 28005175 - 28005112
Alignment:
Q  39 ctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatattttt 102  Q
    ||||||| || ||||||| || |||||||| ||||||||||||||||||||||| || ||||||    
T  28005175 ctgatgtagagccctccaactaattgcatagcatgaaaatgtaaattagttgcagcagattttt 28005112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 26128190 - 26128252
Alignment:
Q  39 ctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttt 101  Q
    ||||||| |||||||| | || |||||||| |||||||||||||||||||||||  |||||||    
T  26128190 ctgatgtagaaccctctaactaattgcatagcatgaaaatgtaaattagttgcattatatttt 26128252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 26178240 - 26178302
Alignment:
Q  39 ctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttt 101  Q
    ||||||| |||||||| | || |||||||| |||||||||||||||||||||||  |||||||    
T  26178240 ctgatgtagaaccctctaactaattgcatagcatgaaaatgtaaattagttgcattatatttt 26178302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 19476193 - 19476136
Alignment:
Q  47 gaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 104  Q
    |||||||||| || ||| |||| || |||||||||||||||||| |||||||||||||    
T  19476193 gaaccctccaactaattccatagcaagaaaatgtaaattagttgtaacatatttttaa 19476136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 26129502 - 26129559
Alignment:
Q  47 gaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 104  Q
    |||||||||| || | |||||| ||||||||||||| ||||||||| |||||||||||    
T  26129502 gaaccctccagctaaatgcatagcatgaaaatgtaatttagttgcagcatatttttaa 26129559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 27377605 - 27377540
Alignment:
Q  39 ctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 104  Q
    |||| |||||| |||||| || |||||||| ||||||||| |||||||||||||  ||||||||||    
T  27377605 ctgacgttgaatcctccaactaattgcatagcatgaaaatataaattagttgcagaatatttttaa 27377540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 17745208 - 17745268
Alignment:
Q  44 gttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 104  Q
    |||||||||||||||||||| || |  || |||||| ||||||||||||||||| ||||||    
T  17745208 gttgaaccctccacctgatttcacataatcaaaatgaaaattagttgcaacatacttttaa 17745268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 19046528 - 19046588
Alignment:
Q  44 gttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 104  Q
    |||||||||||||||||||| || |  || |||||| ||||||||||||||||| ||||||    
T  19046528 gttgaaccctccacctgatttcacataatcaaaatgaaaattagttgcaacatacttttaa 19046588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 28134831 - 28134767
Alignment:
Q  162 tgagaaggtttgacggtagcatcagtttctccaagtagacgtttttgctccatttcttgttcatt 226  Q
    |||||||||||||||| || ||||||||||||||||  ||||| ||| ||||||  |||||||||    
T  28134831 tgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggtccattgattgttcatt 28134767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 18077341 - 18077380
Alignment:
Q  62 ttgcataacatgaaaatgtaaattagttgcaacatatttt 101  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  18077341 ttgcataaaatgaaaacgtaaattagttgcaacatatttt 18077380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 26111550 - 26111617
Alignment:
Q  123 atatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttc 190  Q
    |||||||  ||||| ||||||||||||||||| | ||| ||||||||||||| ||||  |||||||||    
T  26111550 atatgcataatgagatggtactatattacattttcttcctgagaaggtttgatggtaatatcagtttc 26111617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 26128568 - 26128643
Alignment:
Q  123 atatgcacgatgaggtggtactatatt-acattattttcttgagaaggtttgacggtagcatcagtttctccaagt 197  Q
    |||||||| ||||| |  ||||||||| ||||||| ||| |||||| |||||| ||||| ||||||||||||||||    
T  26128568 atatgcacaatgagataatactatatttacattatattcctgagaatgtttgatggtagtatcagtttctccaagt 26128643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 26178618 - 26178693
Alignment:
Q  123 atatgcacgatgaggtggtactatatt-acattattttcttgagaaggtttgacggtagcatcagtttctccaagt 197  Q
    |||||||| ||||| |  ||||||||| ||||||| ||| |||||| |||||| ||||| ||||||||||||||||    
T  26178618 atatgcacaatgagataatactatatttacattatattcctgagaatgtttgatggtagtatcagtttctccaagt 26178693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 26205834 - 26205901
Alignment:
Q  123 atatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttc 190  Q
    |||||||  ||||| ||||||||||||||||| | ||| ||||||||||||| ||||  |||||||||    
T  26205834 atatgcataatgagatggtactatattacattttcttcctgagaaggtttgatggtaatatcagtttc 26205901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 26111203 - 26111237
Alignment:
Q  70 catgaaaatgtaaattagttgcaacatatttttaa 104  Q
    ||||||||||||||||||||||||||| |||||||    
T  26111203 catgaaaatgtaaattagttgcaacatgtttttaa 26111237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 26205486 - 26205520
Alignment:
Q  70 catgaaaatgtaaattagttgcaacatatttttaa 104  Q
    ||||||||||||||||||||||||||| |||||||    
T  26205486 catgaaaatgtaaattagttgcaacatgtttttaa 26205520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 26233549 - 26233583
Alignment:
Q  70 catgaaaatgtaaattagttgcaacatatttttaa 104  Q
    ||||||||||||||||||||||||||| |||||||    
T  26233549 catgaaaatgtaaattagttgcaacatgtttttaa 26233583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 26140136 - 26140197
Alignment:
Q  39 ctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatattt 100  Q
    ||||||| ||||| |||| || | |||||| ||||||||||||| ||||||||| |||||||    
T  26140136 ctgatgtagaaccttccagctaaatgcatagcatgaaaatgtaatttagttgcagcatattt 26140197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 26630671 - 26630614
Alignment:
Q  47 gaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 104  Q
    |||||||||| || |||||| | |||| ||||||||||||||||||  ||||||||||    
T  26630671 gaaccctccaactaattgcaaaccatggaaatgtaaattagttgcatgatatttttaa 26630614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 26233879 - 26233935
Alignment:
Q  123 atatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggta 179  Q
    |||||||  ||||| ||||||||||||||||| | ||| ||||||||||||| ||||    
T  26233879 atatgcataatgagatggtactatattacattttcttcctgagaaggtttgatggta 26233935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 8692895 - 8692992
Alignment:
Q  107 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtagacgtt 204  Q
    |||||||||||| ||||||||||| |||  ||||||| ||||||||| |||| | |||||||||||| ||| |  |||||||||||||||| ||||||    
T  8692895 tttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttgccggcaatatcagtttctccaagtggacgtt 8692992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 22392534 - 22392469
Alignment:
Q  39 ctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 104  Q
    |||| ||||||||||||| |||||||| || |||||||||||||||||||||||  ||||||||||    
T  22392534 ctgacgttgaaccctccaactgattgcgtagcatgaaaatgtaaattagttgcagaatatttttaa 22392469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 18596 - 18500
Alignment:
Q  114 tttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtagacgtttttgct 210  Q
    ||||| ||||||||||| ||| ||| |||  ||||||||| |||| | |||||||||||||||| |  |||||||||||||||| |||||| |||||    
T  18596 tttagctttatatgcacaatgcggttgtaggatattacatgatttacctgagaaggtttgacggcaatatcagtttctccaagtggacgttgttgct 18500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 53882 - 53942
Alignment:
Q  44 gttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 104  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||||||  ||||||||||    
T  53882 gttgaaccctccaactgatagcatagcatgaaaatgtaaattagttgcacaatatttttaa 53942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 1397 - 1332
Alignment:
Q  39 ctgatgttgaaccctccacctgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 104  Q
    |||||| ||| ||||||| || |||||||| ||| ||||||||||||||||||| |||||||||||    
T  1397 ctgatgctgagccctccaactaattgcataccataaaaatgtaaattagttgcagcatatttttaa 1332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 1286 - 1205
Alignment:
Q  120 tttatatgcacgatgaggtggtact----atattacattattttcttgagaaggtttgacggtagcatcagtttctccaagt 197  Q
    ||||||||||| ||||||| |||||    ||||||||||| ||||  || ||||||||| ||||||||||  ||||||||||    
T  1286 tttatatgcacaatgaggtagtactggctatattacattagtttccagacaaggtttgatggtagcatcaagttctccaagt 1205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University