View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_low_6 (Length: 575)
Name: NF2064_low_6
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 133 - 558
Target Start/End: Original strand, 3091039 - 3091468
Alignment:
| Q |
133 |
gatttcaaccattttgaaagggtccttgttgacattgatgtcgcataaaaattgcatgagtaaatcatgactgaatgagaggttgttgctttttaaattg |
232 |
Q |
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| T |
3091039 |
gatttcaaccattttgcaagggtccttgttgacattgatgtcgcataaaaattgcataagtaaatcatgactgaatgagaggttgttgttttttaaattg |
3091138 |
T |
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| Q |
233 |
aggttgaatatgagagacttcctctcatctgctcttgtaatgtgagtttacccctgcaactgtcgccgtgaaaccatgctatgagatcatttcctcttct |
332 |
Q |
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| T |
3091139 |
agcttgaatatgagagacttcctctcatttgctcttgtaatgtgagtttacctctgcaactgtcgccgtgaaaccacgctatgagatcatttcctcttct |
3091238 |
T |
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| Q |
333 |
cttgcaaaagaaattaaagtgcatcccatttaaaataaaaatcaattaattttatagagtttgaagtagtatccgatagtcatgattattttgagcccga |
432 |
Q |
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| T |
3091239 |
cttgcaaaagaaa-----gggcatcccatttaaaataaaaatcaattaattttatagagtttgaagtagtatccgatagtcatgattattttgagtccga |
3091333 |
T |
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| Q |
433 |
gtatatgtcttatttaagtaacgtaagtgttacaaccaaaa---------tagtttttgttgatgctaataattcaaatcctaatattattcatttttta |
523 |
Q |
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| T |
3091334 |
gtatatgtcttatttaagtaatgtaagtgttacaaccaaaatagtgcatttagtttttgttgatgctaataattcaaatcataatattattcatttttta |
3091433 |
T |
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| Q |
524 |
aaataagtcctaatccaattttttaatgtatggat |
558 |
Q |
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| T |
3091434 |
aaataagtcctaatccaattttttaatgtatggat |
3091468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 3089906 - 3090027
Alignment:
| Q |
1 |
tccatttcttcttaattgttaatggctgcttgattctttgttgctctctcaccaaatattggttgatcaaaagcaacaaattgttagtactttctcacta |
100 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3089906 |
tccatttcttcttaattgttaatgcctgcttgattttttgttgctctctcaccaaatattggttgatcaaaagcaaaaaattgttagtactttctcactg |
3090005 |
T |
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| Q |
101 |
ttaagcttggaaacacatgcaa |
122 |
Q |
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| T |
3090006 |
ttaagcttggaaacacatgcaa |
3090027 |
T |
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