View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2064_low_8 (Length: 485)

Name: NF2064_low_8
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2064_low_8
NF2064_low_8
[»] chr1 (6 HSPs)
chr1 (215-485)||(47567416-47567686)
chr1 (10-159)||(47567742-47567891)
chr1 (397-485)||(47574298-47574389)
chr1 (397-485)||(47584015-47584106)
chr1 (45-79)||(40179887-40179921)
chr1 (43-79)||(27542693-27542729)
[»] chr8 (2 HSPs)
chr8 (397-459)||(10401928-10401990)
chr8 (45-83)||(16850678-16850716)
[»] chr6 (9 HSPs)
chr6 (397-453)||(20236382-20236438)
chr6 (397-453)||(22130366-22130422)
chr6 (397-453)||(22206567-22206623)
chr6 (397-455)||(21968553-21968611)
chr6 (397-450)||(18979959-18980012)
chr6 (397-450)||(20084255-20084308)
chr6 (397-453)||(20232973-20233029)
chr6 (397-453)||(22126957-22127013)
chr6 (397-455)||(22086446-22086504)
[»] chr2 (1 HSPs)
chr2 (44-84)||(4931603-4931643)
[»] chr4 (1 HSPs)
chr4 (45-84)||(1048167-1048206)
[»] chr5 (1 HSPs)
chr5 (45-82)||(29037065-29037102)
[»] scaffold0074 (1 HSPs)
scaffold0074 (397-453)||(49342-49398)
[»] scaffold0007 (1 HSPs)
scaffold0007 (397-453)||(6888-6944)
[»] chr7 (1 HSPs)
chr7 (44-80)||(32910657-32910693)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 215 - 485
Target Start/End: Complemental strand, 47567686 - 47567416
Alignment:
Q  215 aaatggaggaaagccatgacaaaagagttttaaggttggtattgtatgtgttgtttggtgagtaatcataattagtgttgttgcttgaagttgaacagtt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567686 aaatggaggaaagccatgacaaaagagttttaaggttggtattgtatgtgttgtttggtgagtaatcataattagtgttgttgcttgaagttgaacagtt 47567587  T
Q  315 acagtaaggtagtggtgggtaatttatatatgcagagaaactgtggtaatatgattaaagaataatgtgagggtatgttgagaaataaaaagtaatcaag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567586 acagtaaggtagtggtgggtaatttatatatgcagagaaactgtggtaatatgattaaagaataatgtgagggtatgttgagaaataaaaagtaatcaag 47567487  T
Q  415 actcttgtttggcacatactcatagataagtattttctcatcttccaaataatatcctagtaatctcacta 485  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47567486 actcttgtttggcacatactcatagataagtatcttctcatcttccaaataatatcctagtaatctcacta 47567416  T

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Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 47567891 - 47567742
Alignment:
Q  10 agatgaaccattagttaattcactactcatgccaatcttaaatataagcaaaaagtcaaatgtatttgattcaaacgtttttaaatatacgtaaaaacga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567891 agatgaaccattagttaattcactactcatgccaatcttaaatataagcaaaaagtcaaatgtatttgattcaaacgtttttaaatatacgtaaaaacga 47567792  T
Q  110 aaactgtgcttggtccaatttggacgtggcacatgaagaggccaaagata 159  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47567791 aaactgtgcttggtccaatttggacttggcacatgaagaggccaaagata 47567742  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 397 - 485
Target Start/End: Complemental strand, 47574389 - 47574298
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtatttt---ctcatcttccaaataatatcctagtaatctcacta 485  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||   ||||||||||||| || ||||||||||||| ||||    
T  47574389 aaataaaaagtaatcaagactcttgtttggcacatactcaaagattagtatcttctcctcatcttccaaacaaaatcctagtaatcttacta 47574298  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 397 - 485
Target Start/End: Complemental strand, 47584106 - 47584015
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtattttc---tcatcttccaaataatatcctagtaatctcacta 485  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||   |||||||||||| || ||||||||||||||||||    
T  47584106 aaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcacta 47584015  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 40179921 - 40179887
Alignment:
Q  45 tcttaaatataagcaaaaagtcaaatgtatttgat 79  Q
    |||||||||||||||||||||||||||||||||||    
T  40179921 tcttaaatataagcaaaaagtcaaatgtatttgat 40179887  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 27542729 - 27542693
Alignment:
Q  43 aatcttaaatataagcaaaaagtcaaatgtatttgat 79  Q
    ||||||||||||||  |||||||||||||||||||||    
T  27542729 aatcttaaatataaataaaaagtcaaatgtatttgat 27542693  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 459
Target Start/End: Original strand, 10401928 - 10401990
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtattttctcatcttc 459  Q
    ||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||| |||||    
T  10401928 aaataaaaagtgatcaagactcttgttcggcacatattcatatataagtattttctcctcttc 10401990  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 16850716 - 16850678
Alignment:
Q  45 tcttaaatataagcaaaaagtcaaatgtatttgattcaa 83  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  16850716 tcttaaatataagcaaaaagtcaaatgtatttggttcaa 16850678  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 453
Target Start/End: Original strand, 20236382 - 20236438
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtattttctc 453  Q
    ||||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||||    
T  20236382 aaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctc 20236438  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 453
Target Start/End: Original strand, 22130366 - 22130422
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtattttctc 453  Q
    ||||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||||    
T  22130366 aaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctc 22130422  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 453
Target Start/End: Complemental strand, 22206623 - 22206567
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtattttctc 453  Q
    ||||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||||    
T  22206623 aaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctc 22206567  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 455
Target Start/End: Original strand, 21968553 - 21968611
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtattttctcat 455  Q
    ||||||||||||||||||||||||||| |  ||||| ||||| |||||||| |||||||    
T  21968553 aaataaaaagtaatcaagactcttgttggaaacatattcataaataagtatcttctcat 21968611  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 450
Target Start/End: Original strand, 18979959 - 18980012
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtatttt 450  Q
    ||||| |||| |||||||||| |||||||||||||| ||||| |||||||||||    
T  18979959 aaatagaaagaaatcaagacttttgtttggcacatattcataaataagtatttt 18980012  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 450
Target Start/End: Original strand, 20084255 - 20084308
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtatttt 450  Q
    ||||| |||| |||||||||| |||||||||||||| ||||| |||||||||||    
T  20084255 aaatagaaagaaatcaagacttttgtttggcacatattcataaataagtatttt 20084308  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 453
Target Start/End: Complemental strand, 20233029 - 20232973
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtattttctc 453  Q
    ||||||||| | |||||| | ||||||||||||||| ||||| ||||||||||||||    
T  20233029 aaataaaaactgatcaagtcccttgtttggcacatattcataaataagtattttctc 20232973  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 453
Target Start/End: Complemental strand, 22127013 - 22126957
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtattttctc 453  Q
    ||||||||| | |||||| | ||||||||||||||| ||||| ||||||||||||||    
T  22127013 aaataaaaactgatcaagtcccttgtttggcacatattcataaataagtattttctc 22126957  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 455
Target Start/End: Original strand, 22086446 - 22086504
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtattttctcat 455  Q
    ||||||||||||||||||||| ||||| |  ||||| ||||| |||||||| |||||||    
T  22086446 aaataaaaagtaatcaagacttttgttggaaacatattcataaataagtatcttctcat 22086504  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 4931643 - 4931603
Alignment:
Q  44 atcttaaatataagcaaaaagtcaaatgtatttgattcaaa 84  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  4931643 atcttaaatataaacaaaaagtcaaatgtatttgattcaaa 4931603  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 1048167 - 1048206
Alignment:
Q  45 tcttaaatataagcaaaaagtcaaatgtatttgattcaaa 84  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  1048167 tcttaaatataagcaaaaagtcaattgcatttgattcaaa 1048206  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 29037065 - 29037102
Alignment:
Q  45 tcttaaatataagcaaaaagtcaaatgtatttgattca 82  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  29037065 tcttaagtataagcaaaaagtcaaatgtatttggttca 29037102  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 453
Target Start/End: Complemental strand, 49398 - 49342
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtattttctc 453  Q
    ||||| |||| |||||||||| ||||| |||||| | ||||| ||||||||||||||    
T  49398 aaatagaaagaaatcaagacttttgttgggcacaaattcataaataagtattttctc 49342  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 453
Target Start/End: Complemental strand, 6944 - 6888
Alignment:
Q  397 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtattttctc 453  Q
    ||||| |||| |||||||||| ||||| |||||| | ||||| ||||||||||||||    
T  6944 aaatagaaagaaatcaagacttttgttgggcacaaattcataaataagtattttctc 6888  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 32910693 - 32910657
Alignment:
Q  44 atcttaaatataagcaaaaagtcaaatgtatttgatt 80  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  32910693 atcttaaatataatcaaaaagtcaaatatatttgatt 32910657  T

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