View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2064_low_9 (Length: 481)
Name: NF2064_low_9
Description: NF2064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2064_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 465
Target Start/End: Original strand, 46937281 - 46937750
Alignment:
| Q |
11 |
cacagagcatgcagttgtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttgg |
110 |
Q |
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| T |
46937281 |
cacagagcatgaagttgtaggttaaaggttttaacagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttgg |
46937380 |
T |
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| Q |
111 |
ctacattctgagctaagcatccaagaggacctgtattgtgtatccagaaatatctagccccctcatcatatagtctctatcaaacaataaaacaaaaaat |
210 |
Q |
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| T |
46937381 |
caacattctgagctaagcatccaagaggacctgtattgtgtatccagaaatatctagccccctcatcatatagtctctatcaaacaataaaacaaagaat |
46937480 |
T |
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| Q |
211 |
gagaact---------------ctttaatatatttgaatagtattatgccaaaaataaaataatgaaagcagatgatttgacaccaaccttaattccaga |
295 |
Q |
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| T |
46937481 |
gagaactctttaatattaaactctttaatatatttgaatagtattatgccaaaaataaaataatgaaagcagatgatttgacaccaaccttaattccaga |
46937580 |
T |
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| Q |
296 |
ttcaaattctaaaagaattgttggaatggaggctagtacttggtccaatgtttttgaataaaatgcaccagcaagatcattctggccaatgtcaaacatg |
395 |
Q |
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| T |
46937581 |
ttcaaattctaaaagaattgttggaatggaggctagtacttggtccaatgtttttgaataaaatgcaccagcaagatcattctggccaatgtcaaacatg |
46937680 |
T |
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| Q |
396 |
tataatcctttctcaaaaatatcttcgctcgggacatacttatcgaattttctacctgaaatgcatgaaa |
465 |
Q |
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| T |
46937681 |
tataatcctttctcaaaaatatcttcgctcgggacatacttatcgaattttctacctgaaatgcatgaaa |
46937750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 277 - 400
Target Start/End: Complemental strand, 36634442 - 36634319
Alignment:
| Q |
277 |
caccaaccttaattccagattcaaattctaaaagaattgttggaatggaggctagtacttggtccaatgtttttgaataaaatgcaccagcaagatcatt |
376 |
Q |
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|||||||||| || |||| ||||||||| | |||||||||||||| |||| |||| ||||||||| ||||||||||||||| |||||||||||||| |
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| T |
36634442 |
caccaacctttataccagtttcaaattccagtagaattgttggaatagaggaaagtatttggtccaagtcttttgaataaaatgcgccagcaagatcatt |
36634343 |
T |
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| Q |
377 |
ctggccaatgtcaaacatgtataa |
400 |
Q |
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| T |
36634342 |
ttggcctatgtcaaacatgtataa |
36634319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 36634729 - 36634563
Alignment:
| Q |
26 |
tgtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttggctacattctgagcta |
125 |
Q |
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| T |
36634729 |
tgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgatttatcatggccaaatgtggcaacattttgaccca |
36634630 |
T |
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| Q |
126 |
agcatccaagaggacctgtattgtgtatccagaaatatctagccccctcatcatatagtctctatca |
192 |
Q |
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| T |
36634629 |
agcatccaagtggacctgtgttatgtacccaaaaattcctagccccgtggtcatatagtctctatca |
36634563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 445
Target Start/End: Complemental strand, 36639216 - 36639049
Alignment:
| Q |
277 |
caccaaccttaattccagattcaaattctaaaagaattgttggaatggaggctagtacttggtccaatgtttttgaataaaatgcaccagcaagatcatt |
376 |
Q |
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|||||||||| ||||||| ||||||||| || |||||||||||||| || || | || ||||||||| || ||||||||||||| || ||||| || |
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| T |
36639216 |
caccaacctttattccagtttcaaattccaatagaattgttggaattga-gcaattatttggtccaagtcttgtgaataaaatgcaatagtgagatcgtt |
36639118 |
T |
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| Q |
377 |
ctggccaatgtcaaacatgtataatcctttctcaaaaatatcttcgctcgggacatacttatcgaattt |
445 |
Q |
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| T |
36639117 |
ccgacctatttcagaaatgtataaccccttctcaaaataatcttcggctgggacatactcatcaaattt |
36639049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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