View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20650_high_2 (Length: 616)
Name: NF20650_high_2
Description: NF20650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20650_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 532; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 7 - 603
Target Start/End: Complemental strand, 8725669 - 8725057
Alignment:
| Q |
7 |
atgcataagttcacaaacaaaactaattcaacctaggcatttcattcaagtactttattcctaatccataaaataaaatcaccctgcattgcaaaaatgt |
106 |
Q |
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| T |
8725669 |
atgcataagttcacaaacaaaactaattcaacctaggcatttcattcaagtactttattcctaatccataaaagaaaatcaccctgcattgcaaaaatgt |
8725570 |
T |
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| Q |
107 |
ggcaacactcatgttaccataatggatggttcagaaacaaatggaaacagacttgttggaattgattggaatgaaacatcttagaataagtctcacatca |
206 |
Q |
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| T |
8725569 |
ggcaacactcatgttaccataatggatggttcacaaacaaatggaaacagacttgttggaattgattggaatgaaacatcttagaacaagtctcacatta |
8725470 |
T |
|
| Q |
207 |
ccgagtatgttaaaggaagagggaggtcgatgttgtatataatcaaattcttatttacaatatgcacaagtcgtaaacactta----------------t |
290 |
Q |
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| T |
8725469 |
ccgagtatgttaaaggaagagggaggtcgatgttgtatataatcaaattcttatttacaatatgcacaagtcggaaacacttaagtttatatactcttat |
8725370 |
T |
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| Q |
291 |
ctttatctcatactcttgtcttaacatgttgagagctgtagtataaatatttacttcagagagtgagagaggcttcggagttttccacgttatattcttg |
390 |
Q |
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| T |
8725369 |
ctttatctcatactcttgtcttaacatgttgagagctgtagtataaatatttacttcagagagtgagagaggcttcggagttttccacgttatattcttg |
8725270 |
T |
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| Q |
391 |
tgttatgattgtcttctgctttcagtagtaacaaaatccccgttaacgaacatcgaattgacgaacttattttcctcgtcaacagttgcaaacgtgctct |
490 |
Q |
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| T |
8725269 |
tgttatgattgtcttctgctttcagtagtaacaaaatccccgttaacgaacatcgaattgacgaacttattttcctcgtcaacagttgcaaacgtgctct |
8725170 |
T |
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| Q |
491 |
ggataacattgttttcattttttaaataggcattgtaaaattgtgcgtttgagaataatagttccggctcattttcatagattgaagattgttgagtaga |
590 |
Q |
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| T |
8725169 |
gtataacattgttttcatttttgaaataggcattgtaaaattgtgcgtttgagaataatagttccggctcattttcatagattgaagattgttgagtaga |
8725070 |
T |
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| Q |
591 |
gtagggaaagtat |
603 |
Q |
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| T |
8725069 |
gtagggaaagtat |
8725057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 599
Target Start/End: Complemental strand, 8744971 - 8744900
Alignment:
| Q |
528 |
aaattgtgcgtttgagaataatagttccggctcattttcatagattgaagattgttgagtagagtagggaaa |
599 |
Q |
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| T |
8744971 |
aaattgtgagtttgagaaatatacttcccgctcattttcatagattgaagattgttgagtagagaagggaaa |
8744900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 372 - 400
Target Start/End: Complemental strand, 7284484 - 7284456
Alignment:
| Q |
372 |
tttccacgttatattcttgtgttatgatt |
400 |
Q |
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| T |
7284484 |
tttccacgttatattcttgtgttatgatt |
7284456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 42234132 - 42234168
Alignment:
| Q |
171 |
attggaatgaaacatcttagaataagtctcacatcac |
207 |
Q |
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| T |
42234132 |
attggaatgaaacatcttagaacaagtatcacatcac |
42234168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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