View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20650_high_3 (Length: 502)
Name: NF20650_high_3
Description: NF20650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20650_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 32710190 - 32709810
Alignment:
| Q |
19 |
gtgcatttggttttaacataactctcatatttaaagccatctacaacacagcactttgatatgggataatctgatagatttttagtgatattgagcagcc |
118 |
Q |
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| T |
32710190 |
gtgcatttggttttaacataactctcatatttaaagccatctacaacacaacactttgatatgggataatctgatagatttttagtgatattgagcagcc |
32710091 |
T |
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| Q |
119 |
ttgctacatttttgttctgtttaactatggtgcattattatgcaatgttacatacaaaaaa-gaggtctataagccaatatttaaaggactaaaatgttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32710090 |
ttgctacatttttgttctgtttaactatggtgcattattatgcaatgttacatacaaaaaaagaggtctataagccaatatttaaaggactaaaatgttt |
32709991 |
T |
|
| Q |
218 |
gatatttttcatgcaatttactttaaatttatcatttaaaggactaaagtcttatatatcagaaatatcatcaagactgtttcaaatttattttaaattt |
317 |
Q |
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| T |
32709990 |
gatatttttcatgcaatttactttaaatttatcatttaaaggactaaagtcttatatatcagaaatatcatcaagactgtttcaaatttattttaaattt |
32709891 |
T |
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| Q |
318 |
gatcaacagcttactaggaaggttccctgtaaaacctaaattggccggaccattgatgacggtagctcgagaacaattttt |
398 |
Q |
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| T |
32709890 |
gatcaacaacttactaggaaggttccctgtaaaacctaaattggccggaccattgatgacggtagctcgagaacaattttt |
32709810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 396 - 484
Target Start/End: Original strand, 32709688 - 32709776
Alignment:
| Q |
396 |
tttccattagaataatgctaaaagaactatctcatataccatatctgaaatattagtcataaagatgttgttcataattcttcagcctt |
484 |
Q |
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| T |
32709688 |
tttccattagaataatgctaaaagaactatctcatataccatatctgaaatattagtcataaaggtgctgttcataattcttcagcctt |
32709776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 197 - 398
Target Start/End: Complemental strand, 13054030 - 13053827
Alignment:
| Q |
197 |
atttaaaggactaaaatgtttgatatttttcatgcaatttactttaaatttatcatttaaaggactaaagtct--tatatatcagaaatatcatcaagac |
294 |
Q |
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| T |
13054030 |
atttaaaggactaaaatgtttgatattttccatgcaatttactttaaatttatcatttaaaggactaaagtctgttatatataagaaatatcatcaagac |
13053931 |
T |
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| Q |
295 |
tgtttcaaatttattttaaatttgatcaacagcttactaggaaggttccctgtaaaacctaaattggccggaccattgatgacggtagctcgagaacaat |
394 |
Q |
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| T |
13053930 |
tgtttcaaatttactttaaatttgattatcaacttacttggaaggttccttgtaaaacccgaagtggctggaccattgatgacggtagctcaagaacaat |
13053831 |
T |
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| Q |
395 |
tttt |
398 |
Q |
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|||| |
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|
| T |
13053830 |
tttt |
13053827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 13054214 - 13054054
Alignment:
| Q |
41 |
tctcatatt-taaagccatctacaacacagcactttgatatgggataatctgatagatttttagtgatattgagcagccttgctacatttttgttctgtt |
139 |
Q |
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||||||||| ||||||||||||| ||||| |||| |||||||||||||||||| ||||| | |||||||| |||||||||||||||| ||||||||| |
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| T |
13054214 |
tctcatattctaaagccatctacgacacaaaactt-gatatgggataatctgatggatttattatgatattgggcagccttgctacattggtgttctgtt |
13054116 |
T |
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| Q |
140 |
taactatggtgcattattatgcaatgttacatacaaaaa--agaggtctataagccaatatt |
199 |
Q |
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| T |
13054115 |
taactttcgggtattattatgcaatgttccatacaaaaaagagaggtctataagccaatatt |
13054054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 14207642 - 14207711
Alignment:
| Q |
22 |
catttggttttaacataactctcatatttaaagccatctacaacacagcactttgatatgggataatctga |
92 |
Q |
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|||||||| ||| |||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |
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| T |
14207642 |
catttggtcttagtataagtctcatatttaaagccatctacgacacaacac-ttgatatgggataatctga |
14207711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 7120704 - 7120659
Alignment:
| Q |
396 |
tttccattagaataatgctaaaagaactatctcatataccatatct |
441 |
Q |
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||||||| | |||||||||||||| ||||||||||| ||||||||| |
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| T |
7120704 |
tttccatgaaaataatgctaaaagtactatctcataaaccatatct |
7120659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 28364098 - 28364166
Alignment:
| Q |
327 |
cttactaggaaggttccctgtaaaacctaaattggccggaccattgatgacggtagctcgagaacaatt |
395 |
Q |
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| T |
28364098 |
cttacttggaaggttccccgtatgaccttaagtggtcggaccatagatgtcggtaactcgagaacaatt |
28364166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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