View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20650_low_4 (Length: 364)

Name: NF20650_low_4
Description: NF20650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20650_low_4
NF20650_low_4
[»] chr2 (3 HSPs)
chr2 (21-353)||(12607418-12607741)
chr2 (265-311)||(5322166-5322212)
chr2 (265-311)||(16519136-16519182)
[»] chr8 (6 HSPs)
chr8 (266-315)||(28517295-28517344)
chr8 (265-311)||(40985121-40985167)
chr8 (265-311)||(26772689-26772735)
chr8 (265-311)||(43733167-43733213)
chr8 (265-310)||(34272504-34272549)
chr8 (271-311)||(9054566-9054606)
[»] chr7 (2 HSPs)
chr7 (265-311)||(30080960-30081006)
chr7 (265-310)||(33406679-33406724)
[»] chr4 (5 HSPs)
chr4 (265-315)||(42777336-42777385)
chr4 (264-311)||(54205827-54205874)
chr4 (265-311)||(27485289-27485335)
chr4 (265-310)||(31530008-31530053)
chr4 (265-310)||(38317276-38317321)
[»] chr1 (2 HSPs)
chr1 (265-311)||(27102871-27102917)
chr1 (265-311)||(50476526-50476572)
[»] chr5 (4 HSPs)
chr5 (265-317)||(13294021-13294072)
chr5 (268-311)||(1978194-1978237)
chr5 (265-311)||(6491172-6491218)
chr5 (265-307)||(27480219-27480261)
[»] scaffold0991 (1 HSPs)
scaffold0991 (265-316)||(3232-3283)
[»] scaffold0036 (1 HSPs)
scaffold0036 (265-311)||(82784-82830)
[»] chr3 (1 HSPs)
chr3 (265-311)||(32858818-32858864)


Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 21 - 353
Target Start/End: Complemental strand, 12607741 - 12607418
Alignment:
Q  21 attgacaattttagaattttgaatataaaagaaaaatatggttgggatgggaaaacgcatcttgagttttatgtaggttcttgataaagatttagtcact 120  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12607741 attgacaattttagaattttgaatataaaagaaaaatatggctgggatgggaaaacgcatcttgagttttatgtaggttcttgataaagatt-agtcact 12607643  T
Q  121 actaagatgttatacaagtcggtagttataatataacctactaacaaaaaa-gaacttaacattatatattctcccaaatcaaaaggatttaacactgtg 219  Q
    |||       ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12607642 act-------tatacaagttggtagttataatataacctactaacaaaaaaagaacttaacattatatattctcccaaatcaaaaggatttaacactctg 12607550  T
Q  220 tcaaacaatttttggtaaactatctttctacaacacctctattgtatacaatttttgagtttcctcaaatgatgaggattttgtattatgaaaaaagaag 319  Q
    | |||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12607549 tgaaacaatttttggtaaactatctttctacaacacctttatt--atacaatttttgagttacctcaaatgatgaggattttgtattatgaaaaaagaag 12607452  T
Q  320 aaccattcaaagtcatcctctccaaatgtcctat 353  Q
    ||||||||||||||||||||||||||||||||||    
T  12607451 aaccattcaaagtcatcctctccaaatgtcctat 12607418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 5322166 - 5322212
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    ||||| |||||||||| || ||||||| |||||||||||||||||||    
T  5322166 atacagtttttgagttcccccaaatgaggaggattttgtattatgaa 5322212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 16519136 - 16519182
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    |||||| |||| ||||||| ||||||| |||||||||||||||||||    
T  16519136 atacaactttttagtttccccaaatgaggaggattttgtattatgaa 16519182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 28517295 - 28517344
Alignment:
Q  266 tacaatttttgagtttcctcaaatgatgaggattttgtattatgaaaaaa 315  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  28517295 tacaatttttgagtatccccaagtgatgaggattttgtattatgaaaaaa 28517344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 40985121 - 40985167
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||    
T  40985121 atacaatttttgagttcccccaaatgaggaggattttgtattatgaa 40985167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 26772689 - 26772735
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    ||||||||||| |||| | ||||||||||||| ||||||||||||||    
T  26772689 atacaattttttagttccttcaaatgatgagggttttgtattatgaa 26772735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 43733167 - 43733213
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    ||||||||||| | || |||||||||| |||||||||||||||||||    
T  43733167 atacaattttttaattccctcaaatgaggaggattttgtattatgaa 43733213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 34272549 - 34272504
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatga 310  Q
    ||||||||||||||||||| ||||||| | ||||||| ||||||||    
T  34272549 atacaatttttgagtttccccaaatgagggggattttttattatga 34272504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 9054566 - 9054606
Alignment:
Q  271 tttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    ||||| ||||||||||||||| |||||||||||||| ||||    
T  9054566 ttttttagtttcctcaaatgaggaggattttgtattttgaa 9054606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 30081006 - 30080960
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||||    
T  30081006 atacaatttttttgtttcctcaaatgatgagggttttgtattatgaa 30080960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 33406679 - 33406724
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatga 310  Q
    |||||||||||||||| |||||||||| | ||||||| ||||||||    
T  33406679 atacaatttttgagttccctcaaatgagggggattttttattatga 33406724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 42777336 - 42777385
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaaaaaa 315  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||    
T  42777336 atacaatttttgagtttc-taaaatgatgaagattttgtattatgaaaaaa 42777385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 54205874 - 54205827
Alignment:
Q  264 tatacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    ||||||||||||||||| || ||||||| ||||||||||| |||||||    
T  54205874 tatacaatttttgagttcccccaaatgaggaggattttgttttatgaa 54205827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 27485289 - 27485335
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    ||||| |||| ||||| |||||||||| |||||||||||||||||||    
T  27485289 atacatttttcgagttccctcaaatgaggaggattttgtattatgaa 27485335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 31530053 - 31530008
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatga 310  Q
    |||||||||||||||| || ||||||| ||||||||| ||||||||    
T  31530053 atacaatttttgagttcccccaaatgaggaggattttttattatga 31530008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 38317276 - 38317321
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatga 310  Q
    |||||||||||||||| || ||||||| ||||||||| ||||||||    
T  38317276 atacaatttttgagttcccccaaatgaggaggattttttattatga 38317321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 27102871 - 27102917
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||||    
T  27102871 atacaatttttgagtttccccaaatgaagagcattttgtattatgaa 27102917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 50476572 - 50476526
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    |||||||||||||||| |||||||||| | |||||||||||||||||    
T  50476572 atacaatttttgagttccctcaaatgagggggattttgtattatgaa 50476526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 13294021 - 13294072
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaaaaaaga 317  Q
    ||||||||||| |||||| | |||||| |||||||||||||||||||||||||    
T  13294021 atacaatttttaagtttctt-aaatgaggaggattttgtattatgaaaaaaga 13294072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 1978237 - 1978194
Alignment:
Q  268 caatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    |||||||||||||||| ||||||| | |||||||||||||||||    
T  1978237 caatttttgagtttccccaaatgagggggattttgtattatgaa 1978194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 6491218 - 6491172
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    |||||||||||||||| || ||||||| || ||||||||||||||||    
T  6491218 atacaatttttgagttcccccaaatgaggaagattttgtattatgaa 6491172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 27480219 - 27480261
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtatta 307  Q
    |||||||||||||||| |||||||||| ||||||||| |||||    
T  27480219 atacaatttttgagttccctcaaatgaggaggattttttatta 27480261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 3283 - 3232
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaaaaaag 316  Q
    ||||||||||| |  |||| ||||||| ||||||||||||||||||||||||    
T  3283 atacaattttttaagttccccaaatgaggaggattttgtattatgaaaaaag 3232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 82830 - 82784
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    |||||||||| ||||| |||||||| | |||||||||||||||||||    
T  82830 atacaattttggagttccctcaaattaggaggattttgtattatgaa 82784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 32858864 - 32858818
Alignment:
Q  265 atacaatttttgagtttcctcaaatgatgaggattttgtattatgaa 311  Q
    |||||||||||||||| || ||||||| ||||||||| |||||||||    
T  32858864 atacaatttttgagttcccccaaatgaggaggattttatattatgaa 32858818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University