View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20651_high_1 (Length: 453)

Name: NF20651_high_1
Description: NF20651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20651_high_1
NF20651_high_1
[»] chr3 (8 HSPs)
chr3 (191-430)||(38285389-38285628)
chr3 (36-137)||(4840866-4840965)
chr3 (36-137)||(38285729-38285828)
chr3 (133-168)||(38285648-38285683)
chr3 (392-422)||(8126201-8126231)
chr3 (375-428)||(20625272-20625325)
chr3 (396-428)||(14626703-14626735)
chr3 (390-422)||(21659207-21659239)
[»] chr6 (3 HSPs)
chr6 (36-137)||(13070101-13070200)
chr6 (36-137)||(14361258-14361357)
chr6 (390-428)||(28737860-28737898)
[»] chr8 (5 HSPs)
chr8 (36-137)||(28156958-28157057)
chr8 (365-422)||(10150908-10150965)
chr8 (390-427)||(13832077-13832114)
chr8 (390-423)||(44838843-44838876)
chr8 (392-428)||(42631812-42631848)
[»] chr4 (16 HSPs)
chr4 (355-428)||(37381088-37381158)
chr4 (339-390)||(53019132-53019183)
chr4 (355-428)||(38938074-38938146)
chr4 (390-422)||(16450228-16450260)
chr4 (339-390)||(30051339-30051390)
chr4 (339-390)||(55131629-55131680)
chr4 (390-428)||(33084786-33084824)
chr4 (390-428)||(42013179-42013217)
chr4 (395-429)||(50459382-50459416)
chr4 (390-423)||(49573917-49573950)
chr4 (391-423)||(11796623-11796655)
chr4 (396-428)||(17659540-17659572)
chr4 (392-428)||(24275288-24275324)
chr4 (390-422)||(30162680-30162712)
chr4 (390-422)||(53403030-53403062)
chr4 (390-422)||(55501241-55501273)
[»] chr7 (12 HSPs)
chr7 (338-428)||(33784093-33784183)
chr7 (390-428)||(46578298-46578336)
chr7 (392-428)||(5691547-5691583)
chr7 (390-428)||(24166296-24166334)
chr7 (390-428)||(39960307-39960345)
chr7 (339-392)||(35481878-35481931)
chr7 (392-428)||(3498327-3498363)
chr7 (355-387)||(9503992-9504024)
chr7 (390-418)||(24733184-24733212)
chr7 (390-422)||(27234927-27234959)
chr7 (392-428)||(27942396-27942432)
chr7 (392-428)||(46221111-46221147)
[»] chr2 (9 HSPs)
chr2 (358-428)||(31211750-31211820)
chr2 (390-428)||(4637076-4637114)
chr2 (391-428)||(19822411-19822448)
chr2 (391-428)||(19842632-19842669)
chr2 (390-422)||(10099621-10099653)
chr2 (392-428)||(27743687-27743723)
chr2 (392-428)||(29712520-29712556)
chr2 (392-428)||(30905195-30905231)
chr2 (392-428)||(38179027-38179063)
[»] chr1 (9 HSPs)
chr1 (339-388)||(47293368-47293417)
chr1 (339-380)||(47991880-47991921)
chr1 (392-428)||(15055026-15055062)
chr1 (364-419)||(33324088-33324143)
chr1 (374-428)||(34332981-34333035)
chr1 (391-428)||(36164027-36164064)
chr1 (390-422)||(21852476-21852508)
chr1 (390-422)||(24478704-24478736)
chr1 (390-422)||(31481904-31481936)
[»] chr5 (7 HSPs)
chr5 (390-428)||(30489165-30489203)
chr5 (332-390)||(22584325-22584383)
chr5 (355-388)||(25596509-25596542)
chr5 (390-422)||(15966682-15966714)
chr5 (390-422)||(36329119-36329151)
chr5 (392-428)||(36346866-36346902)
chr5 (392-428)||(40208548-40208584)
[»] scaffold0531 (1 HSPs)
scaffold0531 (339-390)||(7002-7053)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 191 - 430
Target Start/End: Complemental strand, 38285628 - 38285389
Alignment:
Q  191 tgataatgttgagaagcatagtagagtctaattatagaaaaataaactaaatgaaaaatgaactttataagtttagtggtcataactaaacttacgacat 290  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38285628 tgatcatgttgagaagcatagtagagtctaattatagaaaaataaattaaatgaaaaatgaactttataagtttagtgatcataactaaacttacgacat 38285529  T
Q  291 aatgtaccaaccc-nnnnnnnnnactaaatttagcaaccaacttgtaactactccatctgttataaattataggcaaatttaactttttagattcattca 389  Q
    |||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||    
T  38285528 aatgtaccaacccatttttttttactaaatttagcaaccaacttgtaactactccatctgttataaattatgggcaaatttaacatttta-attcattca 38285430  T
Q  390 aatataaaccacatatatcattaattgaatgaatttaaatt 430  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  38285429 aatataaaccacatatattattaattgaatgaatttaaatt 38285389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 4840866 - 4840965
Alignment:
Q  36 aataccatataatagcactttctataaaaagggctaatataggtttcacgttataatagcgcgcgtaacggaaataaatattattaatattagagtcaat 135  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||||||||||| |   ||||||||||||||||||||||    
T  4840866 aataccatataatagcactttctataaaa-gggctaatataggtgtcacgttataatagcatgcgtaacggaagt-gctattattaatattagagtcaat 4840963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 38285828 - 38285729
Alignment:
Q  36 aataccatataatagcactttctataaaaagggctaatataggtttcacgttataatagcgcgcgtaacggaaataaatattattaatattagagtcaat 135  Q
    |||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||| || |||||||||||   |||||||||||||| |||||||    
T  38285828 aataccatataatagcactttctataaaaa-gactaatatagatgtcacgttataatagcacgggtaacggaaat-gctattattaatattatagtcaat 38285731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 38285683 - 38285648
Alignment:
Q  133 aatctcaaaattggcgtagtgtactttaccaaataa 168  Q
    |||||||||||||||||||| |||||||||||||||    
T  38285683 aatctcaaaattggcgtagtatactttaccaaataa 38285648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 422
Target Start/End: Original strand, 8126201 - 8126231
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaa 422  Q
    |||||||||||||||||||||||||||||||    
T  8126201 tataaaccacatatatcattaattgaatgaa 8126231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 20625325 - 20625272
Alignment:
Q  375 ttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    |||||| ||||||||| ||||||||||||| |||||| | | ||||||||||||    
T  20625325 ttttaggttcattcaattataaaccacatacatcatttaataaatgaatttaaa 20625272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 14626703 - 14626735
Alignment:
Q  396 aaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||| |||||||||||||||||||||||    
T  14626703 aaccacatacatcattaattgaatgaatttaaa 14626735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 21659207 - 21659239
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaa 422  Q
    |||||| ||||||||||||||||||||||||||    
T  21659207 aatatagaccacatatatcattaattgaatgaa 21659239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 13070101 - 13070200
Alignment:
Q  36 aataccatataatagcactttctataaaaagggctaatataggtttcacgttataatagcgcgcgtaacggaaataaatattattaatattagagtcaat 135  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  |||||||||||||   ||||||||||||||||||||||    
T  13070101 aataccatataatagcactttctataaaa-gggctaatataggtgtcacgttataatagcttgcgtaacggaaat-gctattattaatattagagtcaat 13070198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 14361258 - 14361357
Alignment:
Q  36 aataccatataatagcactttctataaaaagggctaatataggtttcacgttataatagcgcgcgtaacggaaataaatattattaatattagagtcaat 135  Q
    |||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||  |||||||||||||   ||||||||||||||||||||||    
T  14361258 aataccatataacagcactttgtataaaa-gggctaatataggtgtcacgttataatagcatgcgtaacggaaat-gctattattaatattagagtcaat 14361355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 28737898 - 28737860
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  28737898 aatatgaaccacatacatcattaattgaatgaatttaaa 28737860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 28157057 - 28156958
Alignment:
Q  36 aataccatataatagcactttctataaaaagggctaatataggtttcacgttataatagcgcgcgtaacggaaataaatattattaatattagagtcaat 135  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  |||||||||||||   |||||||||||||| |||||||    
T  28157057 aataccatataatagcactttctataaaa-gggctaatataggtgtcacgttataatagcatgcgtaacggaaat-gctattattaatattatagtcaat 28156960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 10150965 - 10150908
Alignment:
Q  365 aaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaa 422  Q
    |||||| ||||||||| ||||||||| ||| ||||||||| |||||||||||||||||    
T  10150965 aaatttgactttttaggttcattcaattatgaaccacatacatcattaattgaatgaa 10150908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 427
Target Start/End: Original strand, 13832077 - 13832114
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaatttaa 427  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  13832077 aatatgaaccacatatatcattaattgaatgaatttaa 13832114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 423
Target Start/End: Original strand, 44838843 - 44838876
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaat 423  Q
    ||||| ||||||||||||||||||||||||||||    
T  44838843 aatatgaaccacatatatcattaattgaatgaat 44838876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 42631848 - 42631812
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  42631848 tataaaccacatacatcattaattgaatgaatctaaa 42631812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 355 - 428
Target Start/End: Original strand, 37381088 - 37381158
Alignment:
Q  355 aattataggcaaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||| |||||||| |||||||||||||||   ||||||||||||||||||||||||||||| |||| ||||    
T  37381088 aattataagcaaattttactttttagattcat---aatataaaccacatatatcattaattgaacgaatctaaa 37381158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 53019132 - 53019183
Alignment:
Q  339 tactccatctgttataaattataggcaaatttaactttttagattcattcaa 390  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  53019132 tactccatctgttattaattataagcaaatttaactttttagattcactcaa 53019183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 428
Target Start/End: Complemental strand, 38938146 - 38938074
Alignment:
Q  355 aattataggcaaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||| |||||||| |||||| |||||||||||| ||| ||||||||| || ||||||||||||||| ||||    
T  38938146 aattataagcaaatttgactttt-agattcattcaattatgaaccacatacattattaattgaatgaatctaaa 38938074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 16450228 - 16450260
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaa 422  Q
    |||||||||||||||||||||||||||||||||    
T  16450228 aatataaaccacatatatcattaattgaatgaa 16450260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 30051339 - 30051390
Alignment:
Q  339 tactccatctgttataaattataggcaaatttaactttttagattcattcaa 390  Q
    ||||||||| ||| |||| |||| |||||||||||||||||| |||||||||    
T  30051339 tactccatccgttttaaaatataagcaaatttaactttttaggttcattcaa 30051390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 55131680 - 55131629
Alignment:
Q  339 tactccatctgttataaattataggcaaatttaactttttagattcattcaa 390  Q
    ||||||||| ||| | ||||||| |||||||||||||||||| |||||||||    
T  55131680 tactccatccgttgttaattataagcaaatttaactttttaggttcattcaa 55131629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 33084786 - 33084824
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  33084786 aatatgaaccagatatatcattaattgaatgaatttaaa 33084824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 42013217 - 42013179
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  42013217 aatatagaccacatacatcattaattgaatgaatttaaa 42013179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 429
Target Start/End: Complemental strand, 50459416 - 50459382
Alignment:
Q  395 aaaccacatatatcattaattgaatgaatttaaat 429  Q
    ||||||||||||||||||||| |||||||||||||    
T  50459416 aaaccacatatatcattaattaaatgaatttaaat 50459382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 423
Target Start/End: Complemental strand, 49573950 - 49573917
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaat 423  Q
    ||||||||||||||| ||||||||||||||||||    
T  49573950 aatataaaccacatacatcattaattgaatgaat 49573917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 11796655 - 11796623
Alignment:
Q  391 atataaaccacatatatcattaattgaatgaat 423  Q
    ||||||||||||||||||||| |||||||||||    
T  11796655 atataaaccacatatatcattcattgaatgaat 11796623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 17659540 - 17659572
Alignment:
Q  396 aaccacatatatcattaattgaatgaatttaaa 428  Q
    |||||||||||||||||||||||||||| ||||    
T  17659540 aaccacatatatcattaattgaatgaatctaaa 17659572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 24275288 - 24275324
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    |||| |||||||| |||||||||||||||||||||||    
T  24275288 tatagaccacatacatcattaattgaatgaatttaaa 24275324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 30162680 - 30162712
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaa 422  Q
    ||||| |||||||||||||||||||||||||||    
T  30162680 aatatgaaccacatatatcattaattgaatgaa 30162712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 53403062 - 53403030
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaa 422  Q
    ||||||||||||||| |||||||||||||||||    
T  53403062 aatataaaccacatacatcattaattgaatgaa 53403030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 55501273 - 55501241
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaa 422  Q
    ||||||||||||||| |||||||||||||||||    
T  55501273 aatataaaccacatacatcattaattgaatgaa 55501241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 428
Target Start/End: Complemental strand, 33784183 - 33784093
Alignment:
Q  338 ctactccatctgttataaattataggcaaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||||  ||| |||| |||||||| ||||||||  ||| ||||| |||  |||||||| |||||||||||||||||||||||    
T  33784183 ctactccatctgtttcaaaatataagcaaattttactttttaagttcgttcaattatggaccacatacatcattaattgaatgaatttaaa 33784093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 46578336 - 46578298
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  46578336 aatataaaccacatacatcattaattgaatgaatttaaa 46578298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 5691547 - 5691583
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||| |||||||||||||||||||||||    
T  5691547 tataaaccacatacatcattaattgaatgaatttaaa 5691583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 24166334 - 24166296
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  24166334 aatatgaaccacatatatcattaattgaatgaacttaaa 24166296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 39960307 - 39960345
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  39960307 aataaaaactacatatatcattaattgaatgaatttaaa 39960345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 35481931 - 35481878
Alignment:
Q  339 tactccatctgttataaattataggcaaatttaactttttagattcattcaaat 392  Q
    |||||||||| | |||||||||| |||||||| | |||||||||||||| ||||    
T  35481931 tactccatctatcataaattataagcaaatttgattttttagattcatttaaat 35481878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 3498363 - 3498327
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  3498363 tataaaccacatacatcattaattgaatgaatctaaa 3498327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 387
Target Start/End: Complemental strand, 9504024 - 9503992
Alignment:
Q  355 aattataggcaaatttaactttttagattcatt 387  Q
    ||||||| |||||||||||||||||||||||||    
T  9504024 aattataagcaaatttaactttttagattcatt 9503992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 418
Target Start/End: Original strand, 24733184 - 24733212
Alignment:
Q  390 aatataaaccacatatatcattaattgaa 418  Q
    |||||||||||||||||||||||||||||    
T  24733184 aatataaaccacatatatcattaattgaa 24733212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 27234927 - 27234959
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaa 422  Q
    ||||| |||||||||||||||||||||||||||    
T  27234927 aatatgaaccacatatatcattaattgaatgaa 27234959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 27942396 - 27942432
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  27942396 tataaaccacatacatcattaattgaatgaacttaaa 27942432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 46221147 - 46221111
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  46221147 tataaaccacatacatcattaattgaatgaacttaaa 46221111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 428
Target Start/End: Original strand, 31211750 - 31211820
Alignment:
Q  358 tataggcaaatttaactttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    |||| |||||||| ||||||||||||||||||| ||| ||||||||| ||||||||| |||||||| ||||    
T  31211750 tataagcaaattttactttttagattcattcaattatgaaccacatacatcattaatggaatgaatctaaa 31211820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 4637076 - 4637114
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  4637076 aatataaaccacatacatcattaattgaatgaatctaaa 4637114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 19822448 - 19822411
Alignment:
Q  391 atataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  19822448 atataaaccacatatatcattgattgaatgaacttaaa 19822411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 19842669 - 19842632
Alignment:
Q  391 atataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  19842669 atataaaccacatatatcattgattgaatgaacttaaa 19842632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 10099621 - 10099653
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaa 422  Q
    |||||| ||||||||||||||||||||||||||    
T  10099621 aatatagaccacatatatcattaattgaatgaa 10099653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 27743687 - 27743723
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  27743687 tataaaccacatacatcattaattgaatgaatctaaa 27743723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 29712556 - 29712520
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  29712556 tataaaccacatacatcattaattgaatgaacttaaa 29712520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 30905195 - 30905231
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  30905195 tataaaccacatacatcattaattgaatgaacttaaa 30905231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 38179063 - 38179027
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    |||||||||||||||||||| | ||||||||||||||    
T  38179063 tataaaccacatatatcatttagtgaatgaatttaaa 38179027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 47293417 - 47293368
Alignment:
Q  339 tactccatctgttataaattataggcaaatttaactttttagattcattc 388  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||||||||    
T  47293417 tactccatctgttgtcaattataagcaaatttaactttttagattcattc 47293368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 47991921 - 47991880
Alignment:
Q  339 tactccatctgttataaattataggcaaatttaactttttag 380  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  47991921 tactccatctgttatgaattataagcaaatttaactttttag 47991880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 15055026 - 15055062
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    |||||||||||||||||||||||||||||||| ||||    
T  15055026 tataaaccacatatatcattaattgaatgaatctaaa 15055062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 33324088 - 33324143
Alignment:
Q  364 caaatttaactttttagattcattcaaatataaaccacatatatcattaattgaat 419  Q
    ||||||| ||||||||| ||||||||| ||| ||||||||| || |||||||||||    
T  33324088 caaatttcactttttaggttcattcaattatgaaccacatacattattaattgaat 33324143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 428
Target Start/End: Complemental strand, 34333035 - 34332981
Alignment:
Q  374 tttttagattcattcaaatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||| || ||| |||||| ||||||||| ||||||||||||||||| |||||    
T  34333035 tttttaggttaatttaaatatgaaccacatacatcattaattgaatgaacttaaa 34332981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 36164027 - 36164064
Alignment:
Q  391 atataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  36164027 atatataccacatatatcatttattgaatgaatttaaa 36164064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 21852508 - 21852476
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaa 422  Q
    ||||| |||||||||||||||||||||||||||    
T  21852508 aatatgaaccacatatatcattaattgaatgaa 21852476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 24478736 - 24478704
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaa 422  Q
    |||||| ||||||||||||||||||||||||||    
T  24478736 aatatagaccacatatatcattaattgaatgaa 24478704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 31481936 - 31481904
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaa 422  Q
    |||||||||||||||||||||||| ||||||||    
T  31481936 aatataaaccacatatatcattaaatgaatgaa 31481904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 30489165 - 30489203
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaatttaaa 428  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  30489165 aatatagaccacatatatcattaattgaatgaatttaaa 30489203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 390
Target Start/End: Complemental strand, 22584383 - 22584325
Alignment:
Q  332 ttgtaactactccatctgttataaattataggcaaatttaactttttagattcattcaa 390  Q
    |||||| ||||||||||||| | || |||| |||||||| ||||||||| |||||||||    
T  22584383 ttgtaaatactccatctgtttttaaatataagcaaattttactttttaggttcattcaa 22584325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 388
Target Start/End: Complemental strand, 25596542 - 25596509
Alignment:
Q  355 aattataggcaaatttaactttttagattcattc 388  Q
    ||||||| ||||||||||||||||||||||||||    
T  25596542 aattataagcaaatttaactttttagattcattc 25596509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 15966714 - 15966682
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaa 422  Q
    ||||||||||||||| |||||||||||||||||    
T  15966714 aatataaaccacatacatcattaattgaatgaa 15966682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 36329151 - 36329119
Alignment:
Q  390 aatataaaccacatatatcattaattgaatgaa 422  Q
    ||||| |||||||||||||||||||||||||||    
T  36329151 aatatgaaccacatatatcattaattgaatgaa 36329119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 36346866 - 36346902
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  36346866 tataaaccacatacatcattaattgaatgaacttaaa 36346902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 40208548 - 40208584
Alignment:
Q  392 tataaaccacatatatcattaattgaatgaatttaaa 428  Q
    |||||||||||||||||||||||||||| || |||||    
T  40208548 tataaaccacatatatcattaattgaataaacttaaa 40208584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 7002 - 7053
Alignment:
Q  339 tactccatctgttataaattataggcaaatttaactttttagattcattcaa 390  Q
    ||||||||| ||||  ||||||| |||||||| |||||||||||||||||||    
T  7002 tactccatccgttactaattataagcaaatttgactttttagattcattcaa 7053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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