View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20651_high_3 (Length: 249)

Name: NF20651_high_3
Description: NF20651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20651_high_3
NF20651_high_3
[»] chr3 (22 HSPs)
chr3 (1-238)||(1740685-1740922)
chr3 (53-236)||(795034-795214)
chr3 (141-238)||(6025445-6025542)
chr3 (143-238)||(21494027-21494122)
chr3 (190-238)||(26928890-26928938)
chr3 (196-238)||(3034237-3034279)
chr3 (196-238)||(3693212-3693254)
chr3 (196-238)||(8883764-8883806)
chr3 (196-238)||(8888524-8888566)
chr3 (196-238)||(18467831-18467873)
chr3 (196-238)||(32473458-32473500)
chr3 (196-238)||(39775162-39775204)
chr3 (141-238)||(26962340-26962437)
chr3 (195-238)||(10585647-10585690)
chr3 (44-91)||(26707230-26707277)
chr3 (141-212)||(38436674-38436745)
chr3 (196-238)||(3673180-3673222)
chr3 (196-238)||(8070273-8070315)
chr3 (196-238)||(14438134-14438176)
chr3 (196-238)||(18472625-18472667)
chr3 (141-215)||(20810677-20810751)
chr3 (146-204)||(26707089-26707147)
[»] chr8 (12 HSPs)
chr8 (37-237)||(33848291-33848491)
chr8 (195-238)||(25367443-25367486)
chr8 (195-238)||(37772301-37772344)
chr8 (197-238)||(4237800-4237841)
chr8 (197-238)||(4242539-4242580)
chr8 (195-238)||(8330820-8330863)
chr8 (196-243)||(21411612-21411659)
chr8 (196-243)||(21806104-21806151)
chr8 (195-238)||(34818163-34818206)
chr8 (141-203)||(31030846-31030908)
chr8 (196-238)||(31449323-31449365)
chr8 (141-226)||(19566455-19566540)
[»] chr4 (11 HSPs)
chr4 (141-238)||(30564129-30564226)
chr4 (141-238)||(10318491-10318588)
chr4 (141-238)||(24490314-24490411)
chr4 (145-238)||(17359780-17359872)
chr4 (196-238)||(3997520-3997562)
chr4 (196-238)||(41817376-41817418)
chr4 (141-238)||(10120297-10120394)
chr4 (195-238)||(34561018-34561061)
chr4 (172-238)||(3258386-3258452)
chr4 (196-238)||(5270858-5270900)
chr4 (196-238)||(5927652-5927694)
[»] chr7 (12 HSPs)
chr7 (141-238)||(47761908-47762005)
chr7 (196-238)||(8076644-8076686)
chr7 (196-238)||(26341826-26341868)
chr7 (196-238)||(47102133-47102175)
chr7 (202-238)||(19096848-19096884)
chr7 (195-238)||(19640893-19640936)
chr7 (195-238)||(27256831-27256874)
chr7 (141-212)||(33226655-33226726)
chr7 (195-238)||(40864820-40864863)
chr7 (146-238)||(7874816-7874909)
chr7 (141-226)||(9973756-9973841)
chr7 (196-232)||(36477577-36477613)
[»] chr6 (12 HSPs)
chr6 (141-238)||(3902556-3902652)
chr6 (141-238)||(11956419-11956516)
chr6 (143-238)||(3902198-3902292)
chr6 (144-238)||(5600690-5600784)
chr6 (143-235)||(17281283-17281375)
chr6 (196-238)||(17963993-17964035)
chr6 (196-238)||(6112217-6112259)
chr6 (196-238)||(19772470-19772512)
chr6 (196-238)||(27324517-27324559)
chr6 (72-118)||(5600607-5600655)
chr6 (143-232)||(29325827-29325915)
chr6 (143-215)||(29326019-29326090)
[»] chr5 (17 HSPs)
chr5 (145-238)||(31987008-31987101)
chr5 (195-238)||(32461001-32461044)
chr5 (195-238)||(36941722-36941765)
chr5 (196-238)||(557290-557332)
chr5 (196-238)||(562062-562104)
chr5 (196-238)||(13300948-13300990)
chr5 (196-238)||(26667897-26667939)
chr5 (196-238)||(26939494-26939536)
chr5 (196-238)||(29167407-29167449)
chr5 (196-238)||(36936969-36937011)
chr5 (189-238)||(26869765-26869814)
chr5 (195-238)||(31732131-31732174)
chr5 (196-243)||(36430225-36430272)
chr5 (196-238)||(12044593-12044635)
chr5 (196-238)||(41997258-41997300)
chr5 (196-238)||(42002027-42002069)
chr5 (196-236)||(8770839-8770879)
[»] chr2 (10 HSPs)
chr2 (25-121)||(11658473-11658574)
chr2 (144-238)||(27556850-27556944)
chr2 (182-238)||(44683388-44683444)
chr2 (195-238)||(17968396-17968439)
chr2 (196-238)||(10160178-10160220)
chr2 (196-238)||(18345030-18345072)
chr2 (190-238)||(6297344-6297392)
chr2 (196-238)||(377748-377790)
chr2 (164-238)||(5771213-5771287)
chr2 (146-192)||(39543197-39543243)
[»] chr1 (13 HSPs)
chr1 (54-118)||(14724680-14724744)
chr1 (195-238)||(10140712-10140755)
chr1 (196-238)||(16836744-16836786)
chr1 (196-238)||(26927155-26927197)
chr1 (196-238)||(41097416-41097458)
chr1 (189-238)||(26198952-26199001)
chr1 (200-238)||(1067075-1067113)
chr1 (196-238)||(3094683-3094725)
chr1 (196-238)||(10135944-10135986)
chr1 (30-113)||(25187872-25187955)
chr1 (196-238)||(41387433-41387475)
chr1 (201-238)||(14724534-14724571)
chr1 (143-215)||(39747002-39747074)
[»] scaffold0061 (1 HSPs)
scaffold0061 (195-238)||(49441-49484)
[»] scaffold0017 (1 HSPs)
scaffold0017 (195-238)||(149150-149193)
[»] scaffold0060 (2 HSPs)
scaffold0060 (195-238)||(47430-47473)
scaffold0060 (195-238)||(52374-52417)
[»] scaffold0041 (1 HSPs)
scaffold0041 (195-238)||(35161-35204)
[»] scaffold0628 (1 HSPs)
scaffold0628 (196-238)||(6982-7024)
[»] scaffold0067 (1 HSPs)
scaffold0067 (144-238)||(33684-33778)
[»] scaffold0015 (1 HSPs)
scaffold0015 (196-238)||(193725-193767)
[»] scaffold1910 (1 HSPs)
scaffold1910 (198-238)||(460-500)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 1740685 - 1740922
Alignment:
Q  1 taatcattattcaaaagtgtttcatttgtaacaaataaatttgttacgatttgatccaacagagtatctagaaggttccggatatatccacacacgaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1740685 taatcattattcaaaagtgtttcatttgtaacaaataaatttgttacgatccgatccaacagagtatctagaaggttccggatatatccacacacgaaaa 1740784  T
Q  101 caaacgcggtttgttttagagttaatccatttaaatactccgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacacc 200  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1740785 caaacgcggtttgttttagagttaattcatttaaatactctgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacacc 1740884  T
Q  201 gaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||||||||| |||||||||||    
T  1740885 gaaattcacagttgaggcttcatgtgcttttcctctct 1740922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 795034 - 795214
Alignment:
Q  53 gatccaacagagtatctagaaggttccggatatatccacacacgaaaacaaacgcggtttgttttagagttaatccatttaaatactccgttttttgtta 152  Q
    ||||||| | ||||||  ||||||||| |||||||||||||  |||||||||| |  ||||||||||||||||||| |||||  ||||  |||| |||||    
T  795034 gatccaataaagtatccggaaggttccagatatatccacac--gaaaacaaacaccatttgttttagagttaatccctttaatcactctatttt-tgtta 795130  T
Q  153 cgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctct 236  Q
    ||| |||| | ||||||| ||||  ||  ||||| |||||||||||| ||||||||||||||| |||||||| | |||||||||    
T  795131 cgatctctccctataaaaggagaactcccctcacctattctttacactgaaattcacagttgatgcttcatgcgcttttcctct 795214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 6025542 - 6025445
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||| |||||| | ||||||| ||| | ||||| |||| ||||||||||||||| ||||||||||| | || |||||||||||||||||    
T  6025542 cgttttttgttacaaactctccctataaaaggagggctcgtcccactcattctttacaccgaatttcacagttgatgatttatgtgtttttcctctct 6025445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 21494027 - 21494122
Alignment:
Q  143 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||| ||||| ||||||| ||||  ||| | |||| ||||||  ||||||||||||||||||| | |||||||| |||||||||||    
T  21494027 ttttttgttacgaattcttcctataaaaggagatctcgccccactcattcttaccaccgaaattcacagttgatgattcatgtgcttttcctctct 21494122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 26928938 - 26928890
Alignment:
Q  190 ttctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||||||||| | |||||||| |||||||||||    
T  26928938 ttctttacaccgaaattcacagttgatgattcatgtgcttttcctctct 26928890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 3034279 - 3034237
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  3034279 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 3034237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 3693254 - 3693212
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  3693254 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 3693212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 8883806 - 8883764
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  8883806 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 8883764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 8888566 - 8888524
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  8888566 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 8888524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 18467873 - 18467831
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  18467873 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 18467831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 32473458 - 32473500
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  32473458 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 32473500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 39775162 - 39775204
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  39775162 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 39775204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 26962437 - 26962340
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||| |||||||| ||||||| ||||| ||| | ||||   |||||||||  ||||||||| | || | ||| ||||||||||||||||    
T  26962437 cgttttttgttacaaactcttcctataaaaggagagctcgccccactccatctttacactaaaattcacaatcgatgattcctgtgtttttcctctct 26962340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 10585647 - 10585690
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||    
T  10585647 tacaccaaaattcacagttgatgcttcctgtgtttttcctctct 10585690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 26707277 - 26707230
Alignment:
Q  44 ttacgatttgatccaacagagtatctagaaggttccggatatatccac 91  Q
    |||| ||||||||||||||| ||||| ||| |||||||||||||||||    
T  26707277 ttacaatttgatccaacagaatatctggaaagttccggatatatccac 26707230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 38436674 - 38436745
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagt 212  Q
    ||||||||||||||||||| || ||||||| ||||| ||| | | || |||||| |||||||| ||||||||    
T  38436674 cgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattcttcacaccgaatttcacagt 38436745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 3673222 - 3673180
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||    
T  3673222 acactgaaattcacagttgatgcttcctgtgtttttcctctct 3673180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 8070315 - 8070273
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||    
T  8070315 acaccgaaattcacagttgatgcttcctgtatttttcctctct 8070273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 14438134 - 14438176
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| |||||||||| |||||    
T  14438134 acaccgaaattcacagttgatgcttcctgtgtttttcttctct 14438176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 18472667 - 18472625
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||| | ||||| ||||||||||||||||    
T  18472667 acaccgaaattcacagttaatgcttcctgtgtttttcctctct 18472625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 20810751 - 20810677
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttga 215  Q
    |||||||||||||||||||||| ||||||| ||||| ||| | | || |||||| ||||| || ||| |||||||    
T  20810751 cgttttttgttacgaactcttcctataaaaggagagctcgcccccctcattcttcacaccaaatttcgcagttga 20810677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 26707147 - 26707089
Alignment:
Q  146 tttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaa 204  Q
    ||||||||||| ||| | ||||||| ||||| | | |||||||||||||||||||||||    
T  26707147 tttgttacgaagtctacctataaaaagagaggttgcctcacttattctttacaccgaaa 26707089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 37 - 237
Target Start/End: Complemental strand, 33848491 - 33848291
Alignment:
Q  37 aaatttgttacgatttgatccaacagagtatctagaaggttccggatatatccacacacgaaaacaaacgcggtttgttttagagttaatccatttaaat 136  Q
    ||||||||||||||  ||||||||| ||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||      
T  33848491 aaatttgttacgatccgatccaacaaagtatccggaaggttccggatatatccacacacgaaaacaaacacggtttgttttagagttaatcccttaaatc 33848392  T
Q  137 actccgttttttgttacg-aactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctc 235  Q
    |||||||||||||||||| |||||| | ||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||| |||| ||||||||    
T  33848391 actccgttttttgttacgaaactctccctataaaaggagagctcgcctcacttattctttacaccgaaattcacagttgagg-ttcttgtgcttttcctc 33848293  T
Q  236 tc 237  Q
    ||    
T  33848292 tc 33848291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 25367443 - 25367486
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||| |||| ||||||||||||||||||||||    
T  25367443 tacaccgaaattcacaattgatgcttcatgtgtttttcctctct 25367486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 37772344 - 37772301
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  37772344 tacaccgaaattcacagttgatgcttcctgtgtttttcctctct 37772301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 4237800 - 4237841
Alignment:
Q  197 caccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  4237800 caccgaaattcacagttgatgcttcctgtgtttttcctctct 4237841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 4242539 - 4242580
Alignment:
Q  197 caccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  4242539 caccgaaattcacagttgatgcttcctgtgtttttcctctct 4242580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 8330820 - 8330863
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||    
T  8330820 tacaccgaaattcacagttgatgcttcctgtgcttttcctctct 8330863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 21411659 - 21411612
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgttcc 243  Q
    |||||||||||||||||||| |||||||||| ||||| ||||| ||||    
T  21411659 acaccgaaattcacagttgatgcttcatgtgcttttcttctcttttcc 21411612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 21806151 - 21806104
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgttcc 243  Q
    |||||||||||||||||||| |||||||||| ||||| ||||| ||||    
T  21806151 acaccgaaattcacagttgatgcttcatgtgcttttcttctcttttcc 21806104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 34818163 - 34818206
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||    
T  34818163 tacaccgaaattcacagttgatgcttcctgtgcttttcctctct 34818206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 31030908 - 31030846
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaa 203  Q
    ||||||||||||||||||| || ||||||| ||||| ||| | | || |||||||||||||||    
T  31030908 cgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattctttacaccgaa 31030846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 31449323 - 31449365
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||  ||||||||||||||||    
T  31449323 acaccgaaattcacagttgatgctttctgtgtttttcctctct 31449365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 19566540 - 19566455
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtg 226  Q
    |||||||||||| |||||| || ||||||| ||||| ||| | | || |||||||||| |||| ||| ||||||| | ||||||||    
T  19566540 cgttttttgttatgaactcctcctataaaaggagagctcgcccccctcattctttacatcgaatttcgcagttgatgattcatgtg 19566455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 30564129 - 30564226
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| | ||||||| ||||| ||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  30564129 cgttttttgttacgaactctccctataaaaggagagctcgtcccactcattctttacaccgaaattcacagttgatgattcatgtgtttttcctctct 30564226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 10318491 - 10318588
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||| |||||| | ||||||| ||||| ||  |  ||| ||||||||||||||||||||||||| | | ||||| ||||||||||||||    
T  10318491 cgttttttgttacaaactctgcctataaaaggagagctcccccaactcattctttacaccgaaattcacagttcatgattcatttgtttttcctctct 10318588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 24490411 - 24490314
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| | ||||||| ||||| | |   |||| |||||| |||||||||||||||||||| | ||| |||| |||||||||||    
T  24490411 cgttttttgttacgaactctccctataaaaggagagcttgctccactcattcttcacaccgaaattcacagttgatgattcttgtgcttttcctctct 24490314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 17359872 - 17359780
Alignment:
Q  145 ttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||   ||||||| ||||||||| |||||||||| || |||| ||||||| ||||||| | |||||||| |||| ||||||    
T  17359872 ttttgttacgaactctcactataaaaggagagttcgcctcacttattattgacactgaaattc-cagttgatgtttcatgtgctttttctctct 17359780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 3997520 - 3997562
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  3997520 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 3997562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 41817418 - 41817376
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  41817418 acaccgaaattcacagttgatgcttcttgtgtttttcctctct 41817376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 10120297 - 10120394
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||||| ||||||| ||||| ||| | | || |||||  |||||||| |||||||| || | ||| |||||  |||||||||    
T  10120297 cgttttttgttacgaactcttcctataaaaggagagctcgcccccctcattctacacaccgaatttcacagtcgatgattcctgtgtgattcctctct 10120394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 34561061 - 34561018
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||    
T  34561061 tacaccgaaattcacagttgatgcttcctgtgcttttcctctct 34561018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 3258452 - 3258386
Alignment:
Q  172 gagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||| |||||| |||||| |||| ||||  |||| |||| | ||||||||||||||||||||    
T  3258452 gagagttcgcctcactcattcttcacactgaaaaacacatttgatgtttcatgtgtttttcctctct 3258386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 5270858 - 5270900
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| |||||||||| |||||    
T  5270858 acaccgaaattcacagttgatgcttcctgtgtttttcttctct 5270900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 5927652 - 5927694
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||    
T  5927652 acactgaaattcacagttgatgcttcctgtgtttttcctctct 5927694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 47762005 - 47761908
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| | ||||||||||||| ||| | |||| |||||||||||||||||||||| |||| | |||||||| || ||||||||    
T  47762005 cgttttttgttacgaactctgcctataaaatgagagctcgccccactcattctttacaccgaaattcacaattgatgattcatgtgcttctcctctct 47761908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 8076686 - 8076644
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  8076686 acaccgaaattcacagttgatgcttcatgtgtttttcctctct 8076644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 26341868 - 26341826
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  26341868 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 26341826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 47102175 - 47102133
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  47102175 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 47102133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 19096884 - 19096848
Alignment:
Q  202 aaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||| ||||||||||||||||||||||    
T  19096884 aaattcacagttgatgcttcatgtgtttttcctctct 19096848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 19640936 - 19640893
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||    
T  19640936 tacaccgaaattcacagttgatgcttcttgtgcttttcctctct 19640893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 27256874 - 27256831
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||    
T  27256874 tacaccgaaattcacagttgatgcttcctgtgcttttcctctct 27256831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 33226726 - 33226655
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagt 212  Q
    ||||||||||||||||||| || ||||||| ||||| ||| | | || ||||||||||||||| | ||||||    
T  33226726 cgttttttgttacgaactcctcctataaaaggagagctcgcccccctcattctttacaccgaattccacagt 33226655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 40864820 - 40864863
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||    
T  40864820 tacaccgaaattcacagttgatgcttcctgtgcttttcctctct 40864863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 7874816 - 7874909
Alignment:
Q  146 tttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccg-aaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||| | | | ||||| ||||| ||| ||||||||||||| |||||| |||  |||||||||  ||||||||| || ||||||||    
T  7874816 tttgttacgaactttccctttaaaaggagagctcgcctcacttattcttcacaccgaaaaaacacagttgattcttcatgtgcttatcctctct 7874909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 9973841 - 9973756
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtg 226  Q
    ||||||||||||| |||||||| ||||||| ||||| |||   | || |||||| |||||||| ||| ||||||| | ||||||||    
T  9973841 cgttttttgttacaaactcttcctataaaaggagagctcgctcccctcattcttaacaccgaatttcgcagttgatgattcatgtg 9973756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 36477613 - 36477577
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttc 232  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  36477613 acaccgaaattcacagttgatgcttcctgtgtttttc 36477577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 3902652 - 3902556
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| | ||||||| ||||||||  | |||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  3902652 cgttttttgttacgaactctgcctataaaaggagagttcc-cgcactcattctttacactgaaattcacagttgatgattcatgtgtttttcctctct 3902556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 11956419 - 11956516
Alignment:
Q  141 cgttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| | ||||||| ||||| ||  | |||| ||||||||||||||||||||||||||| | ||| |||| |||||||||||    
T  11956419 cgttttttgttacgaactctacctataaaaggagagctctccccactcattctttacaccgaaattcacagttgatgattcctgtgcttttcctctct 11956516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 3902292 - 3902198
Alignment:
Q  143 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||| | ||||||| ||||||||  | |||| ||||||||||| |||||||||| |||| | ||||||||||||||||||||    
T  3902292 ttttttgttacgaactctgcctataaaaggagagttcccc-cactcattctttacactgaaattcacaattgatgattcatgtgtttttcctctct 3902198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 5600690 - 5600784
Alignment:
Q  144 tttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||| |||||| | ||||||| ||||| | | |||||||||||||||| |||||||||| | |||| |||||  |||||||||||||||    
T  5600690 tttttgttacaaactctccctataaaaggagagcttgcctcacttattctttactccgaaattcataattgatgcttccagtgtttttcctctct 5600784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 17281283 - 17281375
Alignment:
Q  143 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctc 235  Q
    ||||||||||| |||||| | ||||||| ||||| ||  | |||| |||||| ||||||||||||| |||||| ||||| |||| ||||||||    
T  17281283 ttttttgttacaaactctccctataaaaggagagctcaccccactcattcttaacaccgaaattcatagttgatgcttcctgtgcttttcctc 17281375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 17963993 - 17964035
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  17963993 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 17964035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 6112217 - 6112259
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| |||| |||||||||||    
T  6112217 acaccgaaattcacagttgatgcttcttgtgcttttcctctct 6112259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 19772470 - 19772512
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| |||||||||| ||||| |||||    
T  19772470 acaccgaaattcacagttgatgcttcatgtgcttttcttctct 19772512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 27324517 - 27324559
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| |||||||||| |||||    
T  27324517 acaccgaaattcacagttgatgcttcctgtgtttttcttctct 27324559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 5600607 - 5600655
Alignment:
Q  72 aaggttccggatatatccaca--cacgaaaacaaacgcggtttgtttta 118  Q
    |||||||||||||||||||||  | |||||||||||| |||||||||||    
T  5600607 aaggttccggatatatccacacgcgcgaaaacaaacgtggtttgtttta 5600655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 29325915 - 29325827
Alignment:
Q  143 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttc 232  Q
    |||||||||||||||||  | ||||||| ||||| ||  | |||| |||||||||||||||||||| |||||| | ||| |||| |||||    
T  29325915 ttttttgttacgaactcagcctataaaaggagagctcccc-cactcattctttacaccgaaattcatagttgatgattcctgtgcttttc 29325827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 29326090 - 29326019
Alignment:
Q  143 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttga 215  Q
    |||||||||||||||||| | ||||||| ||||| ||  | |||| |||||||||| ||||||||| ||||||    
T  29326090 ttttttgttacgaactctgcctataaaaggagagctc-ccccactcattctttacagcgaaattcatagttga 29326019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 31987101 - 31987008
Alignment:
Q  145 ttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||   ||||||| ||||| ||| |||||||||||||||| ||||| ||||||||||| | ||| ||||||||||||||||    
T  31987101 ttttgttacgaactctcactataaaaggagagctcgcctcacttattctttacgccgaagttcacagttgatgtttcttgtgtttttcctctct 31987008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 32461001 - 32461044
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  32461001 tacaccgaaattcacagttgatgcttcctgtgtttttcctctct 32461044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 36941722 - 36941765
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  36941722 tacaccgaaattcacagttgatgcttcctgtgtttttcctctct 36941765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 557332 - 557290
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  557332 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 557290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 562104 - 562062
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  562104 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 562062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 13300948 - 13300990
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  13300948 acaccgaaattcacagttgatgcttcatgtgcttttcctctct 13300990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 26667939 - 26667897
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  26667939 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 26667897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 26939536 - 26939494
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  26939536 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 26939494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 29167407 - 29167449
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  29167407 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 29167449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 36936969 - 36937011
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  36936969 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 36937011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 26869765 - 26869814
Alignment:
Q  189 attctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||| ||||||||||||||||||||| ||||| |||| |||||||||||    
T  26869765 attctgtacaccgaaattcacagttgatgcttcctgtgcttttcctctct 26869814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 31732174 - 31732131
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||    
T  31732174 tacaccgaaattcacagttgatgcttcctgtgcttttcctctct 31732131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 36430272 - 36430225
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctctgttcc 243  Q
    ||||||||||||| |||||| ||||| |||||||||||||||| ||||    
T  36430272 acaccgaaattcatagttgatgcttcctgtgtttttcctctcttttcc 36430225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 12044593 - 12044635
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||    
T  12044593 acaccgaaattcaaagttgatgcttcctgtgtttttcctctct 12044635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 41997300 - 41997258
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| |||||||||| |||||    
T  41997300 acaccgaaattcacagttgatgcttcctgtgtttttcttctct 41997258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 42002069 - 42002027
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| |||||||||| |||||    
T  42002069 acaccgaaattcacagttgatgcttcctgtgtttttcttctct 42002027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 8770879 - 8770839
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctct 236  Q
    |||| ||||||||||||||| ||||| ||||||||||||||    
T  8770879 acactgaaattcacagttgatgcttcctgtgtttttcctct 8770839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 11658473 - 11658574
Alignment:
Q  25 tttgtaacaaataaatttgttacgatttg-----atccaacagagtatctagaaggttccggatatatccacacacgaaaacaaacgcggtttgttttag 119  Q
    |||||||||||||||||||||||||| ||     |||||||||||||||  |||||||||||||||| |||||   |||||||||||| |||||||||||    
T  11658473 tttgtaacaaataaatttgttacgatctgctctgatccaacagagtatccggaaggttccggatataaccacatgagaaaacaaacgcagtttgttttag 11658572  T
Q  120 ag 121  Q
    ||    
T  11658573 ag 11658574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 27556944 - 27556850
Alignment:
Q  144 tttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||   || |||| ||||| ||| |||||||||  ||||| || |||||||||||||| |||||||||| |||||||||||    
T  27556944 tttttgttacgaactctcgctagaaaaggagagctcgcctcacttatcttttaccccaaaattcacagttgatgcttcatgtgcttttcctctct 27556850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 44683444 - 44683388
Alignment:
Q  182 ctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||| |||||| |||||||| |||||||| ||||| ||||||||||||||||    
T  44683444 ctcacttatcctttaccccgaaattgacagttgatgcttcttgtgtttttcctctct 44683388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 17968396 - 17968439
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  17968396 tacaccgaaattcacagttgatgcttcctgtgtttttcctctct 17968439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 10160178 - 10160220
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  10160178 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 10160220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 18345072 - 18345030
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  18345072 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 18345030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 6297344 - 6297392
Alignment:
Q  190 ttctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||||||    
T  6297344 ttctatacacagaaattcacagttgatgcttcatgtgcttttcctctct 6297392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 377748 - 377790
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| |||||||||| |||||    
T  377748 acaccgaaattcacagttgatgcttcctgtgtttttcttctct 377790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 5771287 - 5771213
Alignment:
Q  164 tataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||| ||||  ||||||||||||||||  |||||||||  |||||| || ||||| |||| |||||||||||    
T  5771287 tataaaaggagaactcgtctcacttattctgcacaccgaaaaacacagtagatgcttcgtgtgcttttcctctct 5771213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 39543243 - 39543197
Alignment:
Q  146 tttgttacgaactcttcatataaaatgagagttcgtctcacttattc 192  Q
    |||||||||| |||| ||||||||| ||||||||| |||||||||||    
T  39543243 tttgttacgagctctgcatataaaaggagagttcgcctcacttattc 39543197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 14724744 - 14724680
Alignment:
Q  54 atccaacagagtatctagaaggttccggatatatccacacacgaaaacaaacgcggtttgtttta 118  Q
    |||||| ||||||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  14724744 atccaatagagtatccggaaggttccagatatatccacacacgaaaacaaacgcggattgtttta 14724680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 10140755 - 10140712
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| |||||||||||||||| |||||    
T  10140755 tacaccgaaattcacagttgatgcttcatgtgtttttcttctct 10140712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 16836744 - 16836786
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  16836744 acaccgaaattcacagttgatgcttcatgtgcttttcctctct 16836786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 26927155 - 26927197
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  26927155 acaccgaaattcacagttgatgcttcctgtgtttttcctctct 26927197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 41097416 - 41097458
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  41097416 acaccgaaattcacagttgatgcttcatgtgcttttcctctct 41097458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 26199001 - 26198952
Alignment:
Q  189 attctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||| ||||||||||||||||||||| ||||| |||| |||||||||||    
T  26199001 attctgtacaccgaaattcacagttgatgcttcctgtgcttttcctctct 26198952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 1067113 - 1067075
Alignment:
Q  200 cgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  1067113 cgaaattcacagttgatgcttcctgtgtttttcctctct 1067075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 3094725 - 3094683
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||  |||| ||||||||||||||||    
T  3094725 acaccgaaattcacagttgatacttcctgtgtttttcctctct 3094683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 10135986 - 10135944
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| |||||||||| |||||    
T  10135986 acaccgaaattcacagttgatgcttcctgtgtttttcttctct 10135944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 25187872 - 25187955
Alignment:
Q  30 aacaaataaatttgttacgatttgatccaacagagtatctagaaggttccggatatatccacacac--gaaaacaaacgcggtttg 113  Q
    |||||||||||||||||||||   |||||||||||||||| |||||||   ||||||| ||||| |  ||||||||||||||||||    
T  25187872 aacaaataaatttgttacgatccaatccaacagagtatct-gaaggtt-atgatatattcacacgcgtgaaaacaaacgcggtttg 25187955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 41387433 - 41387475
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| || ||||||||||||| |||||    
T  41387433 acaccgaaattcacagttgatgcatcatgtgtttttcttctct 41387475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 14724571 - 14724534
Alignment:
Q  201 gaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  14724571 gaaattcacagttgatgcttcatgtgcttttcctctct 14724534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 39747002 - 39747074
Alignment:
Q  143 ttttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttga 215  Q
    |||||||||||||||||||| ||||||| ||||| ||| | | || |||||| |||| ||| ||| |||||||    
T  39747002 ttttttgttacgaactcttcctataaaaggagagctcgcccccctcattcttcacactgaatttcgcagttga 39747074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 49441 - 49484
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  49441 tacaccgaaattcacagttgacgcttcctgtgtttttcctctct 49484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 149193 - 149150
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  149193 tacaccgaaattcacagttgacgcttcctgtgtttttcctctct 149150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 47430 - 47473
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||    
T  47430 tacaccgaaattcacagttgatgcttcctgtgcttttcctctct 47473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 52374 - 52417
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||    
T  52374 tacaccgaaattcacagttgatgcttcctgtgcttttcctctct 52417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 35161 - 35204
Alignment:
Q  195 tacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||    
T  35161 tacaccgaaattcacagttgatgcttcctgtgcttttcctctct 35204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 7024 - 6982
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||| |||||| |||||||||| |||||||||||    
T  7024 acaccgaaattcatagttgatgcttcatgtgcttttcctctct 6982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 33684 - 33778
Alignment:
Q  144 tttttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    ||||||||||||||| | | ||||||| ||||| ||  | |||| |||||| |||| |||||||||| |||| | |||||||| ||||| |||||    
T  33684 tttttgttacgaactatgcctataaaaggagagctcaccccactcattcttaacactgaaattcacatttgatgattcatgtgcttttcgtctct 33778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 193725 - 193767
Alignment:
Q  196 acaccgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||||| ||||| |||| |||||||||||    
T  193725 acaccgaaattcacagttgatgcttcctgtgcttttcctctct 193767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1910 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1910
Description:

Target: scaffold1910; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 500 - 460
Alignment:
Q  198 accgaaattcacagttgaggcttcatgtgtttttcctctct 238  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  500 accgaaattcacagttgatgcttcctgtgtttttcttctct 460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University