View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20651_low_3 (Length: 316)
Name: NF20651_low_3
Description: NF20651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20651_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 3 - 297
Target Start/End: Complemental strand, 23694518 - 23694224
Alignment:
| Q |
3 |
gacgaagaagattcacctacaaaagcctctttctgcttctgtttgagatcaacttttgcatccactacttggatttcattttttacatctataatagtat |
102 |
Q |
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| T |
23694518 |
gacgaagaagattcacctacaaaagcctctttctgcttctgtttgagatcaacttttgcatccactacttggatttcattttttacatctatagtagtat |
23694419 |
T |
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| Q |
103 |
ttgacaaaagagtggaaaataataatgcttcttgtatttgtaattcctctgcatatgtctcttcagatattcgaaaaatttctttatcatgaatggctga |
202 |
Q |
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| T |
23694418 |
ttgacataagagtggaaaataataatgcttcttgtatttgtaattcctctgcatatgtctcttcagatattcgaaaaatttctttatcatgaatggctga |
23694319 |
T |
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| Q |
203 |
gaagtagaaatcatctgctgtagaggatggtgaagttccctccatgtccccaggatgaaaagaatgaaaagaaactcaacaatatgtgttgaaga |
297 |
Q |
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| T |
23694318 |
gaagtagaaatcatctgctgtagaggatggtgaagttccctccatgtccccaggatgaaaagaatgaaaagaaactcaacaatatgtgttgaaga |
23694224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 23701296 - 23701488
Alignment:
| Q |
2 |
cgacgaagaagattcacctacaaaagcctctttctgcttctgtttgagatcaacttttgcatccactacttggatttcattttttacatctataatagta |
101 |
Q |
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|||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
23701296 |
cgacaaagaatattcacctacaaaagcctgcttctgcttctgtttgagatcaacttttgtatccacttcttggatttcatattttacatctatagtagta |
23701395 |
T |
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| Q |
102 |
tttgacaaaagagtggaaaataataatgcttcttgtatttgtaattcctctgcatatgtctcttcagatattcgaaaaatttctttatcatga |
194 |
Q |
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| T |
23701396 |
tttgacataagagcggaaaataataatgcttcttgtatttgtaattcttctgcatatgtctcatcacataatcgaaaaatttcttcatcatga |
23701488 |
T |
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