View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20651_low_4 (Length: 304)

Name: NF20651_low_4
Description: NF20651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20651_low_4
NF20651_low_4
[»] chr4 (31 HSPs)
chr4 (19-295)||(27600534-27600810)
chr4 (127-188)||(27567344-27567405)
chr4 (127-177)||(27571712-27571762)
chr4 (130-187)||(17970391-17970448)
chr4 (127-188)||(27559230-27559291)
chr4 (127-178)||(27411456-27411507)
chr4 (127-186)||(27495625-27495684)
chr4 (127-177)||(27419072-27419122)
chr4 (127-193)||(27585777-27585843)
chr4 (127-192)||(27414290-27414355)
chr4 (148-185)||(27444787-27444824)
chr4 (127-188)||(27563336-27563397)
chr4 (146-185)||(27460586-27460625)
chr4 (146-185)||(27466929-27466968)
chr4 (146-185)||(27480009-27480048)
chr4 (146-185)||(27487091-27487130)
chr4 (146-185)||(27513769-27513808)
chr4 (127-178)||(27577407-27577458)
chr4 (130-187)||(27423314-27423371)
chr4 (148-185)||(27505695-27505732)
chr4 (126-187)||(27506786-27506847)
chr4 (148-185)||(27516602-27516639)
chr4 (148-185)||(27523396-27523433)
chr4 (127-188)||(27556369-27556430)
chr4 (127-187)||(27412753-27412813)
chr4 (146-178)||(27421931-27421963)
chr4 (126-178)||(27485943-27485995)
chr4 (130-186)||(27507805-27507861)
chr4 (130-178)||(27540099-27540147)
chr4 (147-187)||(27557598-27557638)
chr4 (131-179)||(27595478-27595526)
[»] chr3 (9 HSPs)
chr3 (19-212)||(55088017-55088210)
chr3 (130-187)||(55084878-55084935)
chr3 (123-187)||(50910045-50910109)
chr3 (131-187)||(48840703-48840759)
chr3 (74-187)||(50913532-50913645)
chr3 (74-185)||(38035091-38035202)
chr3 (127-187)||(38042029-38042089)
chr3 (130-178)||(38043995-38044043)
chr3 (147-187)||(50906816-50906856)
[»] chr2 (1 HSPs)
chr2 (130-187)||(3073661-3073718)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 27600534 - 27600810
Alignment:
Q  19 ccaaagggacacatagcagtctacgttggagagttgcaaaagaaacggtttgtggttccaatatcatacttgaatcatcctacctttcttgacttgctta 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27600534 ccaaagggacacatagcagtctacgttggtgagttgcaaaagaaacggtttgtggttccaatatcatacttgaatcatcctacctttcttgacttgctta 27600633  T
Q  119 gcagagtggaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatgcattcatcaatcttacctctcaactacgtgc 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27600634 gcagtgtggaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatgcattcatcaatcttacctctcaactacgtgc 27600733  T
Q  219 cgtgtgaaagatttctatattttttatatactagattagaataaaaaataaaatgtactatgtaattatgtatgtac 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27600734 cgtgtgaaagatttctatattttttatatactagattagaataaaaaataaaatgtactatgtaattatgtatgtac 27600810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 27567344 - 27567405
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatgc 188  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||    
T  27567344 gaagaagaatttggttatgatcatccaatgggtggtctcacaattccttgcagcgaagatgc 27567405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 27571712 - 27571762
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgc 177  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  27571712 gaagaagaatttggatatgatcatccaatgggtggtctcacaattccttgc 27571762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 17970391 - 17970448
Alignment:
Q  130 gaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 187  Q
    |||||||| || ||| |||||||||||||||| |||||||||||||||| ||||||||    
T  17970391 gaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatg 17970448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 27559291 - 27559230
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatgc 188  Q
    |||||||| ||||| ||  |||||||||||||||||||||||||||||||||  ||||||||    
T  27559291 gaagaagagtttggatatgatcatccaatgggtggtctcacaattccttgcagtgaagatgc 27559230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 27411507 - 27411456
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgca 178  Q
    |||||||||||||| ||  ||||||| |||||||||||||||||||||||||    
T  27411507 gaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgca 27411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 27495625 - 27495684
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagat 186  Q
    |||||||| ||||| |  ||||||||||||||||||||||| |||||||||| |||||||    
T  27495625 gaagaagagtttggatttaatcatccaatgggtggtctcaccattccttgcagagaagat 27495684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 27419122 - 27419072
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgc 177  Q
    |||||||||||||| ||  ||||||||||||||||||| ||||||||||||    
T  27419122 gaagaagaatttggatatgatcatccaatgggtggtcttacaattccttgc 27419072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 27585777 - 27585843
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatgcattca 193  Q
    |||||||| ||||| ||  ||||||||||||| |||||||| |||||||||| ||||||||| ||||    
T  27585777 gaagaagagtttggatatgatcatccaatgggaggtctcaccattccttgcacagaagatgccttca 27585843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 27414355 - 27414290
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatgcattc 192  Q
    |||||||||||||| ||  ||||||||||||||||||| |||||||| ||||  ||||||| ||||    
T  27414355 gaagaagaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaagatgaattc 27414290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 27444824 - 27444787
Alignment:
Q  148 catccaatgggtggtctcacaattccttgcaaagaaga 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27444824 catccaatgggtggtctcacaattccttgcagagaaga 27444787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 27563397 - 27563336
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatgc 188  Q
    |||||||| ||||| ||  |||||||||||||||| ||||||||||||||||  ||||||||    
T  27563397 gaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgcactgaagatgc 27563336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 27460586 - 27460625
Alignment:
Q  146 atcatccaatgggtggtctcacaattccttgcaaagaaga 185  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  27460586 atcatccaatgggtggtctcaccattccttgcagagaaga 27460625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 27466929 - 27466968
Alignment:
Q  146 atcatccaatgggtggtctcacaattccttgcaaagaaga 185  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  27466929 atcatccaatgggtggtctcactattccttgcagagaaga 27466968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 27480009 - 27480048
Alignment:
Q  146 atcatccaatgggtggtctcacaattccttgcaaagaaga 185  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  27480009 atcatccaatgggtggtctcaccattccttgcagagaaga 27480048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 27487091 - 27487130
Alignment:
Q  146 atcatccaatgggtggtctcacaattccttgcaaagaaga 185  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  27487091 atcatccaatgggtggtcttactattccttgcaaagaaga 27487130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 27513808 - 27513769
Alignment:
Q  146 atcatccaatgggtggtctcacaattccttgcaaagaaga 185  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  27513808 atcatccaatgggtggtctcactattccttgcagagaaga 27513769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 27577407 - 27577458
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgca 178  Q
    |||||||||||||| | |||||| || |||||||||||||||||||| ||||    
T  27577407 gaagaagaatttggattcaatcaccctatgggtggtctcacaattccatgca 27577458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 27423314 - 27423371
Alignment:
Q  130 gaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 187  Q
    ||||| ||||||||||||||||| |||||||| |||||  |||||||||  |||||||    
T  27423314 gaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatg 27423371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 27505732 - 27505695
Alignment:
Q  148 catccaatgggtggtctcacaattccttgcaaagaaga 185  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  27505732 catccaatgggtggtctcactattccttgcagagaaga 27505695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 27506786 - 27506847
Alignment:
Q  126 ggaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 187  Q
    ||||||||||||||| ||  ||||||| |||||||| ||||| ||||||||||  |||||||    
T  27506786 ggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatg 27506847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 27516639 - 27516602
Alignment:
Q  148 catccaatgggtggtctcacaattccttgcaaagaaga 185  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  27516639 catccaatggggggtctcactattccttgcaaagaaga 27516602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 27523433 - 27523396
Alignment:
Q  148 catccaatgggtggtctcacaattccttgcaaagaaga 185  Q
    ||||||||||||||||| || |||||||||||||||||    
T  27523433 catccaatgggtggtctaactattccttgcaaagaaga 27523396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 27556430 - 27556369
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatgc 188  Q
    |||||||||||||| ||  ||||| | |||||||||||||||||||| ||||  ||||||||    
T  27556430 gaagaagaatttggatatgatcattctatgggtggtctcacaattccatgcagtgaagatgc 27556369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 27412753 - 27412813
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 187  Q
    |||||||| ||||| ||  |||||||||||||||| ||||| ||||||||||  |||||||    
T  27412753 gaagaagagtttggatatgatcatccaatgggtggcctcaccattccttgcacggaagatg 27412813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 27421963 - 27421931
Alignment:
Q  146 atcatccaatgggtggtctcacaattccttgca 178  Q
    ||||||||| |||||||||||||||||||||||    
T  27421963 atcatccaacgggtggtctcacaattccttgca 27421931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 27485995 - 27485943
Alignment:
Q  126 ggaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgca 178  Q
    ||||||||||||||| ||  ||||||| |||||||| ||||| ||||||||||    
T  27485995 ggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgca 27485943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 27507861 - 27507805
Alignment:
Q  130 gaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagat 186  Q
    ||||||||||| ||  | ||||||||||||||||| |||||||||||  ||||||||    
T  27507861 gaagaatttggatatgaccatccaatgggtggtcttacaattccttgtgaagaagat 27507805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 27540099 - 27540147
Alignment:
Q  130 gaagaatttggttacaatcatccaatgggtggtctcacaattccttgca 178  Q
    ||||||||||| ||| |||||||||||||||| || || ||||||||||    
T  27540099 gaagaatttgggtaccatcatccaatgggtggactaaccattccttgca 27540147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 27557598 - 27557638
Alignment:
Q  147 tcatccaatgggtggtctcacaattccttgcaaagaagatg 187  Q
    ||||||||||||||||||||| ||||| |||| ||||||||    
T  27557598 tcatccaatgggtggtctcactattccatgcagagaagatg 27557638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 27595478 - 27595526
Alignment:
Q  131 aagaatttggttacaatcatccaatgggtggtctcacaattccttgcaa 179  Q
    |||| ||||| | ||||||||| ||||||||||| ||||||||||||||    
T  27595478 aagagtttggattcaatcatcccatgggtggtcttacaattccttgcaa 27595526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 55088210 - 55088017
Alignment:
Q  19 ccaaagggacacatagcagtctacgttggagagttgcaaaagaaacggtttgtggttccaatatcatacttgaatcatcctacctttcttgacttgctta 118  Q
    |||||||| ||  |||||||||| |||||||||   |||||||| || ||||||||||||||||| ||||| || || ||| | |||||||| ||| | |    
T  55088210 ccaaagggccatgtagcagtctatgttggagaggctcaaaagaagcgttttgtggttccaatatcttacttaaaccacccttcatttcttgatttgttaa 55088111  T
Q  119 gcagagtggaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatgcattcatcaatcttacctctcaact 212  Q
       |||  || ||||| ||||||| |||||||||||||||||||||||| ||||| ||||||||||| || || || |||||||||||||||||    
T  55088110 atcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgcaaagaagaggcttttattaatcttacctctcaact 55088017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 55084878 - 55084935
Alignment:
Q  130 gaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 187  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||||| ||||||||    
T  55084878 gaagaatttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatg 55084935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 50910045 - 50910109
Alignment:
Q  123 agtggaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 187  Q
    |||||| ||||||||||| ||  |||||||||||||||| |||||||||||||||| ||||||||    
T  50910045 agtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatg 50910109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 48840759 - 48840703
Alignment:
Q  131 aagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 187  Q
    |||||||||| ||  |||||||||||||||| |||||||||||||||| ||||||||    
T  48840759 aagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatg 48840703  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 50913532 - 50913645
Alignment:
Q  74 ttccaatatcatacttgaatcatcctacctttcttgacttgcttagcagagtggaagaagaatttggttacaatcatccaatgggtggtctcacaattcc 173  Q
    |||||||||||| ||||||| | |||   ||||  || |||||||||  ||  ||||| |||||||| |||  |||||||||||||||||| ||||||||    
T  50913532 ttccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaatttggctactgtcatccaatgggtggtcttacaattcc 50913631  T
Q  174 ttgcaaagaagatg 187  Q
     ||||| |||||||    
T  50913632 ctgcaaggaagatg 50913645  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 38035091 - 38035202
Alignment:
Q  74 ttccaatatcatacttgaatcatcctacctttcttgacttgcttagcagagtggaagaagaatttggttacaatcatccaatgggtggtctcacaattcc 173  Q
    |||||||||||| ||||||| | |||   ||||  || |||||||||  ||  ||||| ||||| |||||   |||||||||||||||||||||||||||    
T  38035091 ttccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaattcggttattgtcatccaatgggtggtctcacaattcc 38035190  T
Q  174 ttgcaaagaaga 185  Q
     ||||| |||||    
T  38035191 ctgcaaggaaga 38035202  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 38042029 - 38042089
Alignment:
Q  127 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 187  Q
    ||||| ||||| ||||||  ||||| |||||||||||| |||||||| ||||| |||||||    
T  38042029 gaagaggaattcggttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatg 38042089  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 38043995 - 38044043
Alignment:
Q  130 gaagaatttggttacaatcatccaatgggtggtctcacaattccttgca 178  Q
    ||||||||||| ||  ||||||||||||| || ||||||||||||||||    
T  38043995 gaagaatttggatatgatcatccaatgggcggcctcacaattccttgca 38044043  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 50906856 - 50906816
Alignment:
Q  147 tcatccaatgggtggtctcacaattccttgcaaagaagatg 187  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  50906856 tcatccaatgggtggtcttacaattccgtgcaaggaagatg 50906816  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 3073661 - 3073718
Alignment:
Q  130 gaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 187  Q
    |||||||| || ||| |||||||||||||||| |||||||||||||||| ||||||||    
T  3073661 gaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatg 3073718  T

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