View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20652_high_1 (Length: 979)
Name: NF20652_high_1
Description: NF20652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20652_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 491 - 949
Target Start/End: Original strand, 35189624 - 35190083
Alignment:
| Q |
491 |
acactcactcctcaaaccgactaaaccgccaaattcgtccctactttgtaagacgctctacaatagtttcatgatattatgaatatttcaaaaagnnnnn |
590 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35189624 |
acactcactcctcaaaccgactaaaccgccaaattcgtccctactttgtaagacgctctacaatagttccatgatattatgaatatttcaaaaagttttt |
35189723 |
T |
|
| Q |
591 |
nnactccgtcaaaatttacttgtattagtcattttgagagtatgctaggaatcgacactaagtggttgaatagtatagagatcccctaaaataaatagta |
690 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35189724 |
ttactccgtcaaaatttacttgtattggtcattttgagagtatgctaggaattgacactaagtggttgaatagtatagagatcccctaaaataaatagta |
35189823 |
T |
|
| Q |
691 |
tagagaccagattgataataa-ttgttaaaatacaggacctaattgatagtaactcgttaaatgtagggatcaacttaatggtttaacagagtcgaagat |
789 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35189824 |
tagagaccagattgataataagttgttaaaatacaggacctaattgatagtaactcgttaaatgtagggatcaacttaatggtttaacagagtcggagat |
35189923 |
T |
|
| Q |
790 |
ctttaagaaatattcgtaatttgaggacatgtttaagagtgtcctataaagtcaaatactaatttggtggttaattcaaactaaccgttgatgttatctt |
889 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35189924 |
ctttaagaaatattcgtaatttgaggacatgtttaagagtgtcctataaagtcaaatactaattttgtggttaattcaaactaaccgttgatgttatctt |
35190023 |
T |
|
| Q |
890 |
gttagttcacttaagaatcattgagtgaatccatctaattataaaaattcttcatggatt |
949 |
Q |
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| T |
35190024 |
gttagttcacttaagaatcattgagttaatccatctaattataaaaattcttcatggatt |
35190083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 21 - 424
Target Start/End: Original strand, 35189165 - 35189563
Alignment:
| Q |
21 |
acatcatcaaacgacaactcaaacactctctctatccaccataatactacattttaccacaatcaatgtcccctctattctattctattctatttatgct |
120 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35189165 |
acatcatcaaacgacaactcaaacactctctctatccaccataatactacattttaccacaatcaatgtcccctcta-----ttctattctatttatgct |
35189259 |
T |
|
| Q |
121 |
gcaccaataatcaatcacatcctcagaagatagggtgtggaaaaatgaatgatgggtttgtgagagctgatcaaattgatctaaaaaccattgatgaaca |
220 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35189260 |
gcaccaataatcaatcacattctcagaagatagggtgtggaaaaatgaatgatgggtttgtgagagctgatcaaattgatctaaaaaccattgatgaaca |
35189359 |
T |
|
| Q |
221 |
acttgagaaacacttcaacaaggtaaatgatgattcttctcatgatcactcaaactctattgctactactggtggtaataacatggagcaaagagaagag |
320 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35189360 |
acttgagaaacacttcaacaaggtaaatgatgattcttctcatgatcactcaaactctattgctactactggtggtaataacatggagcaaagagaagag |
35189459 |
T |
|
| Q |
321 |
tgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgttgctg |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35189460 |
tgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgttgctg |
35189559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 321 - 422
Target Start/End: Original strand, 43970824 - 43970925
Alignment:
| Q |
321 |
tgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgttgctg |
420 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| | |||||||||||||| || |||||||| |||||| | |||||| ||||||||||||| |
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| T |
43970824 |
tgggaaattgatccttctaaactcatcatcaaaagtgttattgctcgtggcacttttggcactgttcatcgtggtgtttatgatactcaagatgttgctg |
43970923 |
T |
|
| Q |
421 |
gt |
422 |
Q |
| |
|
|| |
|
|
| T |
43970924 |
gt |
43970925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 43970595 - 43970669
Alignment:
| Q |
170 |
tgatgggtttgtgagagctgatcaaattgatctaaaaaccattgatgaacaacttgagaaacacttcaacaaggt |
244 |
Q |
| |
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|||||||||||| ||||| ||||| |||||||| |||| ||| |||||||| ||||| | ||| |||||||||| |
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|
| T |
43970595 |
tgatgggtttgtaagagcagatcagattgatctgaaaagcatcgatgaacagcttgaaagacatctcaacaaggt |
43970669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 316 - 423
Target Start/End: Original strand, 1663755 - 1663862
Alignment:
| Q |
316 |
aagagtgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgt |
415 |
Q |
| |
|
|||| ||||| |||||||||||||| || || ||||| | |||| | |||||||| ||||| ||||||||||| |||||| | ||||||||| |||||| |
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| T |
1663755 |
aagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactgttcatcgtggtgtttatgatggcatagatgt |
1663854 |
T |
|
| Q |
416 |
tgctggta |
423 |
Q |
| |
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|||||||| |
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| T |
1663855 |
tgctggta |
1663862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 584
Target Start/End: Complemental strand, 4791343 - 4791270
Alignment:
| Q |
512 |
taaaccgccaaattcgtccct-actttgtaagacgctctacaatagtttcatgatattatgaatatttcaaaaa |
584 |
Q |
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|||||| ||||||| |||| | |||||||| || || || |||||||||||||| ||||||||||||||||||| |
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| T |
4791343 |
taaaccaccaaattagtccttgactttgtatgatgcacttcaatagtttcatgagattatgaatatttcaaaaa |
4791270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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